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Internal validation study to assess the SeqStudio™ for human identification’s performance

The SeqStudio™ for human identification (HID) is a new benchtop capillary electrophoresis (CE) platform recently developed by Applied Biosystems for genotyping and sequencing short tandem repeat (STR) fragments. Compared to the previous series of CE systems developed by this maker, it is more compac...

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Autores principales: Soldati, Giulia, Turrina, Stefania, Saccardo, Chiara, Ausania, Francesco, De Leo, Domenico
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10247830/
https://www.ncbi.nlm.nih.gov/pubmed/37195354
http://dx.doi.org/10.1007/s00414-023-03016-y
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author Soldati, Giulia
Turrina, Stefania
Saccardo, Chiara
Ausania, Francesco
De Leo, Domenico
author_facet Soldati, Giulia
Turrina, Stefania
Saccardo, Chiara
Ausania, Francesco
De Leo, Domenico
author_sort Soldati, Giulia
collection PubMed
description The SeqStudio™ for human identification (HID) is a new benchtop capillary electrophoresis (CE) platform recently developed by Applied Biosystems for genotyping and sequencing short tandem repeat (STR) fragments. Compared to the previous series of CE systems developed by this maker, it is more compact and easier to use. Moreover, by allowing the detection of 4 to 8 fluorescent dyes, it seems to be fully compatible with the different kits of autosomal and gonosomal STR markers usually used in forensic genetics, which are available in trade and supplied by various manufacturers. However, being a new CE model, before its routine use in forensic genetics applications, it should undergo appropriate analytical validation studies in its own laboratories to understand its potential and limitations. A series of experiments on DNA samples coming from cell line controls, using the GlobalFiler™ IQC Amplification Kit, were carried out to meet this purpose. The SeqStudio™ Genetic Analyzer for HID’s findings on genotyping reproducibility (precision and accuracy of sizing), sensitivity, signal variability between dyes (intra- and inter-color channel balance), and stutter ratios are reported. These findings confirm the validity of this new CE system and its capability to generate reliable results. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00414-023-03016-y.
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spelling pubmed-102478302023-06-09 Internal validation study to assess the SeqStudio™ for human identification’s performance Soldati, Giulia Turrina, Stefania Saccardo, Chiara Ausania, Francesco De Leo, Domenico Int J Legal Med Original Article The SeqStudio™ for human identification (HID) is a new benchtop capillary electrophoresis (CE) platform recently developed by Applied Biosystems for genotyping and sequencing short tandem repeat (STR) fragments. Compared to the previous series of CE systems developed by this maker, it is more compact and easier to use. Moreover, by allowing the detection of 4 to 8 fluorescent dyes, it seems to be fully compatible with the different kits of autosomal and gonosomal STR markers usually used in forensic genetics, which are available in trade and supplied by various manufacturers. However, being a new CE model, before its routine use in forensic genetics applications, it should undergo appropriate analytical validation studies in its own laboratories to understand its potential and limitations. A series of experiments on DNA samples coming from cell line controls, using the GlobalFiler™ IQC Amplification Kit, were carried out to meet this purpose. The SeqStudio™ Genetic Analyzer for HID’s findings on genotyping reproducibility (precision and accuracy of sizing), sensitivity, signal variability between dyes (intra- and inter-color channel balance), and stutter ratios are reported. These findings confirm the validity of this new CE system and its capability to generate reliable results. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00414-023-03016-y. Springer Berlin Heidelberg 2023-05-17 2023 /pmc/articles/PMC10247830/ /pubmed/37195354 http://dx.doi.org/10.1007/s00414-023-03016-y Text en © The Author(s) 2023, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Soldati, Giulia
Turrina, Stefania
Saccardo, Chiara
Ausania, Francesco
De Leo, Domenico
Internal validation study to assess the SeqStudio™ for human identification’s performance
title Internal validation study to assess the SeqStudio™ for human identification’s performance
title_full Internal validation study to assess the SeqStudio™ for human identification’s performance
title_fullStr Internal validation study to assess the SeqStudio™ for human identification’s performance
title_full_unstemmed Internal validation study to assess the SeqStudio™ for human identification’s performance
title_short Internal validation study to assess the SeqStudio™ for human identification’s performance
title_sort internal validation study to assess the seqstudio™ for human identification’s performance
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10247830/
https://www.ncbi.nlm.nih.gov/pubmed/37195354
http://dx.doi.org/10.1007/s00414-023-03016-y
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