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piRT-IFC: Physics-informed real-time impedance flow cytometry for the characterization of cellular intrinsic electrical properties
Real-time transformation was important for the practical implementation of impedance flow cytometry. The major obstacle was the time-consuming step of translating raw data to cellular intrinsic electrical properties (e.g., specific membrane capacitance C(sm) and cytoplasm conductivity σ(cyto)). Alth...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10250341/ https://www.ncbi.nlm.nih.gov/pubmed/37303829 http://dx.doi.org/10.1038/s41378-023-00545-9 |
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author | Luan, Xiaofeng Liu, Pengbin Huang, Di Zhao, Haiping Li, Yuang Sun, Sheng Zhang, Wenchang Zhang, Lingqian Li, Mingxiao Zhi, Tian Zhao, Yang Huang, Chengjun |
author_facet | Luan, Xiaofeng Liu, Pengbin Huang, Di Zhao, Haiping Li, Yuang Sun, Sheng Zhang, Wenchang Zhang, Lingqian Li, Mingxiao Zhi, Tian Zhao, Yang Huang, Chengjun |
author_sort | Luan, Xiaofeng |
collection | PubMed |
description | Real-time transformation was important for the practical implementation of impedance flow cytometry. The major obstacle was the time-consuming step of translating raw data to cellular intrinsic electrical properties (e.g., specific membrane capacitance C(sm) and cytoplasm conductivity σ(cyto)). Although optimization strategies such as neural network-aided strategies were recently reported to provide an impressive boost to the translation process, simultaneously achieving high speed, accuracy, and generalization capability is still challenging. To this end, we proposed a fast parallel physical fitting solver that could characterize single cells’ C(sm) and σ(cyto) within 0.62 ms/cell without any data preacquisition or pretraining requirements. We achieved the 27000-fold acceleration without loss of accuracy compared with the traditional solver. Based on the solver, we implemented physics-informed real-time impedance flow cytometry (piRT-IFC), which was able to characterize up to 100,902 cells’ C(sm) and σ(cyto) within 50 min in a real-time manner. Compared to the fully connected neural network (FCNN) predictor, the proposed real-time solver showed comparable processing speed but higher accuracy. Furthermore, we used a neutrophil degranulation cell model to represent tasks to test unfamiliar samples without data for pretraining. After being treated with cytochalasin B and N-Formyl-Met-Leu-Phe, HL-60 cells underwent dynamic degranulation processes, and we characterized cell’s C(sm) and σ(cyto) using piRT-IFC. Compared to the results from our solver, accuracy loss was observed in the results predicted by the FCNN, revealing the advantages of high speed, accuracy, and generalizability of the proposed piRT-IFC. [Image: see text] |
format | Online Article Text |
id | pubmed-10250341 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-102503412023-06-10 piRT-IFC: Physics-informed real-time impedance flow cytometry for the characterization of cellular intrinsic electrical properties Luan, Xiaofeng Liu, Pengbin Huang, Di Zhao, Haiping Li, Yuang Sun, Sheng Zhang, Wenchang Zhang, Lingqian Li, Mingxiao Zhi, Tian Zhao, Yang Huang, Chengjun Microsyst Nanoeng Article Real-time transformation was important for the practical implementation of impedance flow cytometry. The major obstacle was the time-consuming step of translating raw data to cellular intrinsic electrical properties (e.g., specific membrane capacitance C(sm) and cytoplasm conductivity σ(cyto)). Although optimization strategies such as neural network-aided strategies were recently reported to provide an impressive boost to the translation process, simultaneously achieving high speed, accuracy, and generalization capability is still challenging. To this end, we proposed a fast parallel physical fitting solver that could characterize single cells’ C(sm) and σ(cyto) within 0.62 ms/cell without any data preacquisition or pretraining requirements. We achieved the 27000-fold acceleration without loss of accuracy compared with the traditional solver. Based on the solver, we implemented physics-informed real-time impedance flow cytometry (piRT-IFC), which was able to characterize up to 100,902 cells’ C(sm) and σ(cyto) within 50 min in a real-time manner. Compared to the fully connected neural network (FCNN) predictor, the proposed real-time solver showed comparable processing speed but higher accuracy. Furthermore, we used a neutrophil degranulation cell model to represent tasks to test unfamiliar samples without data for pretraining. After being treated with cytochalasin B and N-Formyl-Met-Leu-Phe, HL-60 cells underwent dynamic degranulation processes, and we characterized cell’s C(sm) and σ(cyto) using piRT-IFC. Compared to the results from our solver, accuracy loss was observed in the results predicted by the FCNN, revealing the advantages of high speed, accuracy, and generalizability of the proposed piRT-IFC. [Image: see text] Nature Publishing Group UK 2023-06-08 /pmc/articles/PMC10250341/ /pubmed/37303829 http://dx.doi.org/10.1038/s41378-023-00545-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Luan, Xiaofeng Liu, Pengbin Huang, Di Zhao, Haiping Li, Yuang Sun, Sheng Zhang, Wenchang Zhang, Lingqian Li, Mingxiao Zhi, Tian Zhao, Yang Huang, Chengjun piRT-IFC: Physics-informed real-time impedance flow cytometry for the characterization of cellular intrinsic electrical properties |
title | piRT-IFC: Physics-informed real-time impedance flow cytometry for the characterization of cellular intrinsic electrical properties |
title_full | piRT-IFC: Physics-informed real-time impedance flow cytometry for the characterization of cellular intrinsic electrical properties |
title_fullStr | piRT-IFC: Physics-informed real-time impedance flow cytometry for the characterization of cellular intrinsic electrical properties |
title_full_unstemmed | piRT-IFC: Physics-informed real-time impedance flow cytometry for the characterization of cellular intrinsic electrical properties |
title_short | piRT-IFC: Physics-informed real-time impedance flow cytometry for the characterization of cellular intrinsic electrical properties |
title_sort | pirt-ifc: physics-informed real-time impedance flow cytometry for the characterization of cellular intrinsic electrical properties |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10250341/ https://www.ncbi.nlm.nih.gov/pubmed/37303829 http://dx.doi.org/10.1038/s41378-023-00545-9 |
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