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OpenCL-accelerated first-principles calculations of all-electron quantum perturbations on HPC resources
We have proposed, for the first time, an OpenCL implementation for the all-electron density-functional perturbation theory (DFPT) calculations in FHI-aims, which can effectively compute all its time-consuming simulation stages, i.e., the real-space integration of the response density, the Poisson so...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10250621/ https://www.ncbi.nlm.nih.gov/pubmed/37304683 http://dx.doi.org/10.3389/fchem.2023.1156891 |
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author | Wu, Zhikun Shang, Honghui Wu, Yangjun Zhang, Zhongcheng Liu, Ying Zhang, Yuyang Ouyang, Yucheng Cui, Huimin Feng, Xiaobing |
author_facet | Wu, Zhikun Shang, Honghui Wu, Yangjun Zhang, Zhongcheng Liu, Ying Zhang, Yuyang Ouyang, Yucheng Cui, Huimin Feng, Xiaobing |
author_sort | Wu, Zhikun |
collection | PubMed |
description | We have proposed, for the first time, an OpenCL implementation for the all-electron density-functional perturbation theory (DFPT) calculations in FHI-aims, which can effectively compute all its time-consuming simulation stages, i.e., the real-space integration of the response density, the Poisson solver for the calculation of the electrostatic potential, and the response Hamiltonian matrix, by utilizing various heterogeneous accelerators. Furthermore, to fully exploit the massively parallel computing capabilities, we have performed a series of general-purpose graphics processing unit (GPGPU)-targeted optimizations that significantly improved the execution efficiency by reducing register requirements, branch divergence, and memory transactions. Evaluations on the Sugon supercomputer have shown that notable speedups can be achieved across various materials. |
format | Online Article Text |
id | pubmed-10250621 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102506212023-06-10 OpenCL-accelerated first-principles calculations of all-electron quantum perturbations on HPC resources Wu, Zhikun Shang, Honghui Wu, Yangjun Zhang, Zhongcheng Liu, Ying Zhang, Yuyang Ouyang, Yucheng Cui, Huimin Feng, Xiaobing Front Chem Chemistry We have proposed, for the first time, an OpenCL implementation for the all-electron density-functional perturbation theory (DFPT) calculations in FHI-aims, which can effectively compute all its time-consuming simulation stages, i.e., the real-space integration of the response density, the Poisson solver for the calculation of the electrostatic potential, and the response Hamiltonian matrix, by utilizing various heterogeneous accelerators. Furthermore, to fully exploit the massively parallel computing capabilities, we have performed a series of general-purpose graphics processing unit (GPGPU)-targeted optimizations that significantly improved the execution efficiency by reducing register requirements, branch divergence, and memory transactions. Evaluations on the Sugon supercomputer have shown that notable speedups can be achieved across various materials. Frontiers Media S.A. 2023-05-26 /pmc/articles/PMC10250621/ /pubmed/37304683 http://dx.doi.org/10.3389/fchem.2023.1156891 Text en Copyright © 2023 Wu, Shang, Wu, Zhang, Liu, Zhang, Ouyang, Cui and Feng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Chemistry Wu, Zhikun Shang, Honghui Wu, Yangjun Zhang, Zhongcheng Liu, Ying Zhang, Yuyang Ouyang, Yucheng Cui, Huimin Feng, Xiaobing OpenCL-accelerated first-principles calculations of all-electron quantum perturbations on HPC resources |
title | OpenCL-accelerated first-principles calculations of all-electron quantum perturbations on HPC resources |
title_full | OpenCL-accelerated first-principles calculations of all-electron quantum perturbations on HPC resources |
title_fullStr | OpenCL-accelerated first-principles calculations of all-electron quantum perturbations on HPC resources |
title_full_unstemmed | OpenCL-accelerated first-principles calculations of all-electron quantum perturbations on HPC resources |
title_short | OpenCL-accelerated first-principles calculations of all-electron quantum perturbations on HPC resources |
title_sort | opencl-accelerated first-principles calculations of all-electron quantum perturbations on hpc resources |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10250621/ https://www.ncbi.nlm.nih.gov/pubmed/37304683 http://dx.doi.org/10.3389/fchem.2023.1156891 |
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