Cargando…
The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae)
The perennial herbal medicine species Aconitum tschangbaischanense, is endemic to Changhai Mountain, Jilin province. In this study, we attempted to uncover the complete chloroplast (cp) genome of A. tschangbaischanense based on sequencing data using the Illumina sequencing technology. As per the res...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10251779/ https://www.ncbi.nlm.nih.gov/pubmed/37303611 http://dx.doi.org/10.1080/23802359.2023.2220435 |
_version_ | 1785056014723186688 |
---|---|
author | Liu, Xuelian Zhu, Junyi Jiang, Mingge Guan, Shengchao Zhang, Liqiu Zhao, Haiying |
author_facet | Liu, Xuelian Zhu, Junyi Jiang, Mingge Guan, Shengchao Zhang, Liqiu Zhao, Haiying |
author_sort | Liu, Xuelian |
collection | PubMed |
description | The perennial herbal medicine species Aconitum tschangbaischanense, is endemic to Changhai Mountain, Jilin province. In this study, we attempted to uncover the complete chloroplast (cp) genome of A. tschangbaischanense based on sequencing data using the Illumina sequencing technology. As per the results: (1) the length of its complete cp genome is 155,881 bp with a typical tetrad structure; (2) the structure of its cp genome contains large single-copy and small single-copy (LSC and SSC) regions of 86,351 and 16,9444 bp, respectively, isolated by two inverted repeat regions (IRs) of 26,293 bp; (3) we annotated a total 131 genes, consisting of 86 protein-coding genes, eight rRNA genes, and 37 tRNA genes. According to the maximum-likelihood phylogenetic tree based on complete cp genomes, A. tschangbaischanense, showed close association with A. carmichaelii, which belongs to clade I. Finally, this study provides the characteristics of the cp genome of A. tschangbaischanense, and its phylogenetic position. |
format | Online Article Text |
id | pubmed-10251779 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-102517792023-06-10 The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) Liu, Xuelian Zhu, Junyi Jiang, Mingge Guan, Shengchao Zhang, Liqiu Zhao, Haiying Mitochondrial DNA B Resour Plastome Reports The perennial herbal medicine species Aconitum tschangbaischanense, is endemic to Changhai Mountain, Jilin province. In this study, we attempted to uncover the complete chloroplast (cp) genome of A. tschangbaischanense based on sequencing data using the Illumina sequencing technology. As per the results: (1) the length of its complete cp genome is 155,881 bp with a typical tetrad structure; (2) the structure of its cp genome contains large single-copy and small single-copy (LSC and SSC) regions of 86,351 and 16,9444 bp, respectively, isolated by two inverted repeat regions (IRs) of 26,293 bp; (3) we annotated a total 131 genes, consisting of 86 protein-coding genes, eight rRNA genes, and 37 tRNA genes. According to the maximum-likelihood phylogenetic tree based on complete cp genomes, A. tschangbaischanense, showed close association with A. carmichaelii, which belongs to clade I. Finally, this study provides the characteristics of the cp genome of A. tschangbaischanense, and its phylogenetic position. Taylor & Francis 2023-06-08 /pmc/articles/PMC10251779/ /pubmed/37303611 http://dx.doi.org/10.1080/23802359.2023.2220435 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Plastome Reports Liu, Xuelian Zhu, Junyi Jiang, Mingge Guan, Shengchao Zhang, Liqiu Zhao, Haiying The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title | The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title_full | The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title_fullStr | The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title_short | The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title_sort | complete chloroplast genome sequence of aconitum tschangbaischanense (ranunculaceae) |
topic | Plastome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10251779/ https://www.ncbi.nlm.nih.gov/pubmed/37303611 http://dx.doi.org/10.1080/23802359.2023.2220435 |
work_keys_str_mv | AT liuxuelian thecompletechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT zhujunyi thecompletechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT jiangmingge thecompletechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT guanshengchao thecompletechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT zhangliqiu thecompletechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT zhaohaiying thecompletechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT liuxuelian completechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT zhujunyi completechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT jiangmingge completechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT guanshengchao completechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT zhangliqiu completechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae AT zhaohaiying completechloroplastgenomesequenceofaconitumtschangbaischanenseranunculaceae |