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Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System

Multiple studies presented satisfactory performances for the treatment of various ocular diseases. To date, there has been no study that describes a multiclass model, medically accurate, and trained on large diverse dataset. No study has addressed a class imbalance problem in one giant dataset origi...

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Autores principales: Chłopowiec, Adam R., Karanowski, Konrad, Skrzypczak, Tomasz, Grzesiuk, Mateusz, Chłopowiec, Adrian B., Tabakov, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10253060/
https://www.ncbi.nlm.nih.gov/pubmed/37296756
http://dx.doi.org/10.3390/diagnostics13111904
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author Chłopowiec, Adam R.
Karanowski, Konrad
Skrzypczak, Tomasz
Grzesiuk, Mateusz
Chłopowiec, Adrian B.
Tabakov, Martin
author_facet Chłopowiec, Adam R.
Karanowski, Konrad
Skrzypczak, Tomasz
Grzesiuk, Mateusz
Chłopowiec, Adrian B.
Tabakov, Martin
author_sort Chłopowiec, Adam R.
collection PubMed
description Multiple studies presented satisfactory performances for the treatment of various ocular diseases. To date, there has been no study that describes a multiclass model, medically accurate, and trained on large diverse dataset. No study has addressed a class imbalance problem in one giant dataset originating from multiple large diverse eye fundus image collections. To ensure a real-life clinical environment and mitigate the problem of biased medical image data, 22 publicly available datasets were merged. To secure medical validity only Diabetic Retinopathy (DR), Age-Related Macular Degeneration (AMD) and Glaucoma (GL) were included. The state-of-the-art models ConvNext, RegNet and ResNet were utilized. In the resulting dataset, there were 86,415 normal, 3787 GL, 632 AMD and 34,379 DR fundus images. ConvNextTiny achieved the best results in terms of recognizing most of the examined eye diseases with the most metrics. The overall accuracy was 80.46 ± 1.48. Specific accuracy values were: 80.01 ± 1.10 for normal eye fundus, 97.20 ± 0.66 for GL, 98.14 ± 0.31 for AMD, 80.66 ± 1.27 for DR. A suitable screening model for the most prevalent retinal diseases in ageing societies was designed. The model was developed on a diverse, combined large dataset which made the obtained results less biased and more generalizable.
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spelling pubmed-102530602023-06-10 Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System Chłopowiec, Adam R. Karanowski, Konrad Skrzypczak, Tomasz Grzesiuk, Mateusz Chłopowiec, Adrian B. Tabakov, Martin Diagnostics (Basel) Article Multiple studies presented satisfactory performances for the treatment of various ocular diseases. To date, there has been no study that describes a multiclass model, medically accurate, and trained on large diverse dataset. No study has addressed a class imbalance problem in one giant dataset originating from multiple large diverse eye fundus image collections. To ensure a real-life clinical environment and mitigate the problem of biased medical image data, 22 publicly available datasets were merged. To secure medical validity only Diabetic Retinopathy (DR), Age-Related Macular Degeneration (AMD) and Glaucoma (GL) were included. The state-of-the-art models ConvNext, RegNet and ResNet were utilized. In the resulting dataset, there were 86,415 normal, 3787 GL, 632 AMD and 34,379 DR fundus images. ConvNextTiny achieved the best results in terms of recognizing most of the examined eye diseases with the most metrics. The overall accuracy was 80.46 ± 1.48. Specific accuracy values were: 80.01 ± 1.10 for normal eye fundus, 97.20 ± 0.66 for GL, 98.14 ± 0.31 for AMD, 80.66 ± 1.27 for DR. A suitable screening model for the most prevalent retinal diseases in ageing societies was designed. The model was developed on a diverse, combined large dataset which made the obtained results less biased and more generalizable. MDPI 2023-05-29 /pmc/articles/PMC10253060/ /pubmed/37296756 http://dx.doi.org/10.3390/diagnostics13111904 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chłopowiec, Adam R.
Karanowski, Konrad
Skrzypczak, Tomasz
Grzesiuk, Mateusz
Chłopowiec, Adrian B.
Tabakov, Martin
Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System
title Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System
title_full Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System
title_fullStr Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System
title_full_unstemmed Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System
title_short Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System
title_sort counteracting data bias and class imbalance—towards a useful and reliable retinal disease recognition system
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10253060/
https://www.ncbi.nlm.nih.gov/pubmed/37296756
http://dx.doi.org/10.3390/diagnostics13111904
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