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Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System
Multiple studies presented satisfactory performances for the treatment of various ocular diseases. To date, there has been no study that describes a multiclass model, medically accurate, and trained on large diverse dataset. No study has addressed a class imbalance problem in one giant dataset origi...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10253060/ https://www.ncbi.nlm.nih.gov/pubmed/37296756 http://dx.doi.org/10.3390/diagnostics13111904 |
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author | Chłopowiec, Adam R. Karanowski, Konrad Skrzypczak, Tomasz Grzesiuk, Mateusz Chłopowiec, Adrian B. Tabakov, Martin |
author_facet | Chłopowiec, Adam R. Karanowski, Konrad Skrzypczak, Tomasz Grzesiuk, Mateusz Chłopowiec, Adrian B. Tabakov, Martin |
author_sort | Chłopowiec, Adam R. |
collection | PubMed |
description | Multiple studies presented satisfactory performances for the treatment of various ocular diseases. To date, there has been no study that describes a multiclass model, medically accurate, and trained on large diverse dataset. No study has addressed a class imbalance problem in one giant dataset originating from multiple large diverse eye fundus image collections. To ensure a real-life clinical environment and mitigate the problem of biased medical image data, 22 publicly available datasets were merged. To secure medical validity only Diabetic Retinopathy (DR), Age-Related Macular Degeneration (AMD) and Glaucoma (GL) were included. The state-of-the-art models ConvNext, RegNet and ResNet were utilized. In the resulting dataset, there were 86,415 normal, 3787 GL, 632 AMD and 34,379 DR fundus images. ConvNextTiny achieved the best results in terms of recognizing most of the examined eye diseases with the most metrics. The overall accuracy was 80.46 ± 1.48. Specific accuracy values were: 80.01 ± 1.10 for normal eye fundus, 97.20 ± 0.66 for GL, 98.14 ± 0.31 for AMD, 80.66 ± 1.27 for DR. A suitable screening model for the most prevalent retinal diseases in ageing societies was designed. The model was developed on a diverse, combined large dataset which made the obtained results less biased and more generalizable. |
format | Online Article Text |
id | pubmed-10253060 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-102530602023-06-10 Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System Chłopowiec, Adam R. Karanowski, Konrad Skrzypczak, Tomasz Grzesiuk, Mateusz Chłopowiec, Adrian B. Tabakov, Martin Diagnostics (Basel) Article Multiple studies presented satisfactory performances for the treatment of various ocular diseases. To date, there has been no study that describes a multiclass model, medically accurate, and trained on large diverse dataset. No study has addressed a class imbalance problem in one giant dataset originating from multiple large diverse eye fundus image collections. To ensure a real-life clinical environment and mitigate the problem of biased medical image data, 22 publicly available datasets were merged. To secure medical validity only Diabetic Retinopathy (DR), Age-Related Macular Degeneration (AMD) and Glaucoma (GL) were included. The state-of-the-art models ConvNext, RegNet and ResNet were utilized. In the resulting dataset, there were 86,415 normal, 3787 GL, 632 AMD and 34,379 DR fundus images. ConvNextTiny achieved the best results in terms of recognizing most of the examined eye diseases with the most metrics. The overall accuracy was 80.46 ± 1.48. Specific accuracy values were: 80.01 ± 1.10 for normal eye fundus, 97.20 ± 0.66 for GL, 98.14 ± 0.31 for AMD, 80.66 ± 1.27 for DR. A suitable screening model for the most prevalent retinal diseases in ageing societies was designed. The model was developed on a diverse, combined large dataset which made the obtained results less biased and more generalizable. MDPI 2023-05-29 /pmc/articles/PMC10253060/ /pubmed/37296756 http://dx.doi.org/10.3390/diagnostics13111904 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chłopowiec, Adam R. Karanowski, Konrad Skrzypczak, Tomasz Grzesiuk, Mateusz Chłopowiec, Adrian B. Tabakov, Martin Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System |
title | Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System |
title_full | Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System |
title_fullStr | Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System |
title_full_unstemmed | Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System |
title_short | Counteracting Data Bias and Class Imbalance—Towards a Useful and Reliable Retinal Disease Recognition System |
title_sort | counteracting data bias and class imbalance—towards a useful and reliable retinal disease recognition system |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10253060/ https://www.ncbi.nlm.nih.gov/pubmed/37296756 http://dx.doi.org/10.3390/diagnostics13111904 |
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