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TRAX-CHEMxt: Towards the Homogeneous Chemical Stage of Radiation Damage

The indirect effect of radiation plays an important role in radio-induced biological damages. Monte Carlo codes have been widely used in recent years to study the chemical evolution of particle tracks. However, due to the large computational efforts required, their applicability is typically limited...

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Autores principales: Camazzola, Gianmarco, Boscolo, Daria, Scifoni, Emanuele, Dorn, Alexander, Durante, Marco, Krämer, Michael, Abram, Valentino, Fuss, Martina C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10253526/
https://www.ncbi.nlm.nih.gov/pubmed/37298351
http://dx.doi.org/10.3390/ijms24119398
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author Camazzola, Gianmarco
Boscolo, Daria
Scifoni, Emanuele
Dorn, Alexander
Durante, Marco
Krämer, Michael
Abram, Valentino
Fuss, Martina C.
author_facet Camazzola, Gianmarco
Boscolo, Daria
Scifoni, Emanuele
Dorn, Alexander
Durante, Marco
Krämer, Michael
Abram, Valentino
Fuss, Martina C.
author_sort Camazzola, Gianmarco
collection PubMed
description The indirect effect of radiation plays an important role in radio-induced biological damages. Monte Carlo codes have been widely used in recent years to study the chemical evolution of particle tracks. However, due to the large computational efforts required, their applicability is typically limited to simulations in pure water targets and to temporal scales up to the µs. In this work, a new extension of TRAX-CHEM is presented, namely TRAX-CHEMxt, able to predict the chemical yields at longer times, with the capability of exploring the homogeneous biochemical stage. Based on the species coordinates produced around one track, the set of reaction–diffusion equations is solved numerically with a computationally light approach based on concentration distributions. In the overlapping time scale (500 ns–1 µs), a very good agreement to standard TRAX-CHEM is found, with deviations below 6% for different beam qualities and oxygenations. Moreover, an improvement in the computational speed by more than three orders of magnitude is achieved. The results of this work are also compared with those from another Monte Carlo-based algorithm and a fully homogeneous code (Kinetiscope). TRAX-CHEMxt will allow for studying the variation in chemical endpoints at longer timescales with the introduction, as the next step, of biomolecules, for more realistic assessments of biological response under different radiation and environmental conditions.
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spelling pubmed-102535262023-06-10 TRAX-CHEMxt: Towards the Homogeneous Chemical Stage of Radiation Damage Camazzola, Gianmarco Boscolo, Daria Scifoni, Emanuele Dorn, Alexander Durante, Marco Krämer, Michael Abram, Valentino Fuss, Martina C. Int J Mol Sci Article The indirect effect of radiation plays an important role in radio-induced biological damages. Monte Carlo codes have been widely used in recent years to study the chemical evolution of particle tracks. However, due to the large computational efforts required, their applicability is typically limited to simulations in pure water targets and to temporal scales up to the µs. In this work, a new extension of TRAX-CHEM is presented, namely TRAX-CHEMxt, able to predict the chemical yields at longer times, with the capability of exploring the homogeneous biochemical stage. Based on the species coordinates produced around one track, the set of reaction–diffusion equations is solved numerically with a computationally light approach based on concentration distributions. In the overlapping time scale (500 ns–1 µs), a very good agreement to standard TRAX-CHEM is found, with deviations below 6% for different beam qualities and oxygenations. Moreover, an improvement in the computational speed by more than three orders of magnitude is achieved. The results of this work are also compared with those from another Monte Carlo-based algorithm and a fully homogeneous code (Kinetiscope). TRAX-CHEMxt will allow for studying the variation in chemical endpoints at longer timescales with the introduction, as the next step, of biomolecules, for more realistic assessments of biological response under different radiation and environmental conditions. MDPI 2023-05-28 /pmc/articles/PMC10253526/ /pubmed/37298351 http://dx.doi.org/10.3390/ijms24119398 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Camazzola, Gianmarco
Boscolo, Daria
Scifoni, Emanuele
Dorn, Alexander
Durante, Marco
Krämer, Michael
Abram, Valentino
Fuss, Martina C.
TRAX-CHEMxt: Towards the Homogeneous Chemical Stage of Radiation Damage
title TRAX-CHEMxt: Towards the Homogeneous Chemical Stage of Radiation Damage
title_full TRAX-CHEMxt: Towards the Homogeneous Chemical Stage of Radiation Damage
title_fullStr TRAX-CHEMxt: Towards the Homogeneous Chemical Stage of Radiation Damage
title_full_unstemmed TRAX-CHEMxt: Towards the Homogeneous Chemical Stage of Radiation Damage
title_short TRAX-CHEMxt: Towards the Homogeneous Chemical Stage of Radiation Damage
title_sort trax-chemxt: towards the homogeneous chemical stage of radiation damage
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10253526/
https://www.ncbi.nlm.nih.gov/pubmed/37298351
http://dx.doi.org/10.3390/ijms24119398
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