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Challenges for Kinetics Predictions via Neural Network Potentials: A Wilkinson’s Catalyst Case

Ab initio kinetic studies are important to understand and design novel chemical reactions. While the Artificial Force Induced Reaction (AFIR) method provides a convenient and efficient framework for kinetic studies, accurate explorations of reaction path networks incur high computational costs. In t...

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Detalles Bibliográficos
Autores principales: Staub, Ruben, Gantzer, Philippe, Harabuchi, Yu, Maeda, Satoshi, Varnek, Alexandre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10254369/
https://www.ncbi.nlm.nih.gov/pubmed/37298952
http://dx.doi.org/10.3390/molecules28114477
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author Staub, Ruben
Gantzer, Philippe
Harabuchi, Yu
Maeda, Satoshi
Varnek, Alexandre
author_facet Staub, Ruben
Gantzer, Philippe
Harabuchi, Yu
Maeda, Satoshi
Varnek, Alexandre
author_sort Staub, Ruben
collection PubMed
description Ab initio kinetic studies are important to understand and design novel chemical reactions. While the Artificial Force Induced Reaction (AFIR) method provides a convenient and efficient framework for kinetic studies, accurate explorations of reaction path networks incur high computational costs. In this article, we are investigating the applicability of Neural Network Potentials (NNP) to accelerate such studies. For this purpose, we are reporting a novel theoretical study of ethylene hydrogenation with a transition metal complex inspired by Wilkinson’s catalyst, using the AFIR method. The resulting reaction path network was analyzed by the Generative Topographic Mapping method. The network’s geometries were then used to train a state-of-the-art NNP model, to replace expensive ab initio calculations with fast NNP predictions during the search. This procedure was applied to run the first NNP-powered reaction path network exploration using the AFIR method. We discovered that such explorations are particularly challenging for general purpose NNP models, and we identified the underlying limitations. In addition, we are proposing to overcome these challenges by complementing NNP models with fast semiempirical predictions. The proposed solution offers a generally applicable framework, laying the foundations to further accelerate ab initio kinetic studies with Machine Learning Force Fields, and ultimately explore larger systems that are currently inaccessible.
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spelling pubmed-102543692023-06-10 Challenges for Kinetics Predictions via Neural Network Potentials: A Wilkinson’s Catalyst Case Staub, Ruben Gantzer, Philippe Harabuchi, Yu Maeda, Satoshi Varnek, Alexandre Molecules Article Ab initio kinetic studies are important to understand and design novel chemical reactions. While the Artificial Force Induced Reaction (AFIR) method provides a convenient and efficient framework for kinetic studies, accurate explorations of reaction path networks incur high computational costs. In this article, we are investigating the applicability of Neural Network Potentials (NNP) to accelerate such studies. For this purpose, we are reporting a novel theoretical study of ethylene hydrogenation with a transition metal complex inspired by Wilkinson’s catalyst, using the AFIR method. The resulting reaction path network was analyzed by the Generative Topographic Mapping method. The network’s geometries were then used to train a state-of-the-art NNP model, to replace expensive ab initio calculations with fast NNP predictions during the search. This procedure was applied to run the first NNP-powered reaction path network exploration using the AFIR method. We discovered that such explorations are particularly challenging for general purpose NNP models, and we identified the underlying limitations. In addition, we are proposing to overcome these challenges by complementing NNP models with fast semiempirical predictions. The proposed solution offers a generally applicable framework, laying the foundations to further accelerate ab initio kinetic studies with Machine Learning Force Fields, and ultimately explore larger systems that are currently inaccessible. MDPI 2023-05-31 /pmc/articles/PMC10254369/ /pubmed/37298952 http://dx.doi.org/10.3390/molecules28114477 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Staub, Ruben
Gantzer, Philippe
Harabuchi, Yu
Maeda, Satoshi
Varnek, Alexandre
Challenges for Kinetics Predictions via Neural Network Potentials: A Wilkinson’s Catalyst Case
title Challenges for Kinetics Predictions via Neural Network Potentials: A Wilkinson’s Catalyst Case
title_full Challenges for Kinetics Predictions via Neural Network Potentials: A Wilkinson’s Catalyst Case
title_fullStr Challenges for Kinetics Predictions via Neural Network Potentials: A Wilkinson’s Catalyst Case
title_full_unstemmed Challenges for Kinetics Predictions via Neural Network Potentials: A Wilkinson’s Catalyst Case
title_short Challenges for Kinetics Predictions via Neural Network Potentials: A Wilkinson’s Catalyst Case
title_sort challenges for kinetics predictions via neural network potentials: a wilkinson’s catalyst case
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10254369/
https://www.ncbi.nlm.nih.gov/pubmed/37298952
http://dx.doi.org/10.3390/molecules28114477
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