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Calculation of Self, Corrected, and Transport Diffusivities of Isopropyl Alcohol in UiO-66
The UiO-6x family of metal-organic frameworks has been extensively studied for applications in chemical warfare agent (CWA) capture and destruction. An understanding of intrinsic transport phenomena, such as diffusion, is key to understanding experimental results and designing effective materials fo...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10254453/ https://www.ncbi.nlm.nih.gov/pubmed/37299696 http://dx.doi.org/10.3390/nano13111793 |
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author | Mhatre, Chinmay V. Wardzala, Jacob J. Shukla, Priyanka B. Agrawal, Mayank Johnson, J. Karl |
author_facet | Mhatre, Chinmay V. Wardzala, Jacob J. Shukla, Priyanka B. Agrawal, Mayank Johnson, J. Karl |
author_sort | Mhatre, Chinmay V. |
collection | PubMed |
description | The UiO-6x family of metal-organic frameworks has been extensively studied for applications in chemical warfare agent (CWA) capture and destruction. An understanding of intrinsic transport phenomena, such as diffusion, is key to understanding experimental results and designing effective materials for CWA capture. However, the relatively large size of CWAs and their simulants makes diffusion in the small-pored pristine UiO-66 very slow and hence impractical to study directly with direct molecular simulations because of the time scales required. We used isopropanol (IPA) as a surrogate for CWAs to investigate the fundamental diffusion mechanisms of a polar molecule within pristine UiO-66. IPA can form hydrogen bonds with the [Formula: see text]-OH groups bound to the metal oxide clusters in UiO-66, similar to some CWAs, and can be studied by direct molecular dynamics simulations. We report self, corrected, and transport diffusivities of IPA in pristine UiO-66 as a function of loading. Our calculations highlight the importance of the accurate modeling of the hydrogen bonding interactions on diffusivities, with about an order of magnitude decrease in diffusion coefficients when the hydrogen bonding between IPA and the [Formula: see text]-OH groups is included. We found that a fraction of the IPA molecules have very low mobility during the course of a simulation, while a small fraction are highly mobile, exhibiting mean square displacements far greater than the ensemble average. |
format | Online Article Text |
id | pubmed-10254453 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-102544532023-06-10 Calculation of Self, Corrected, and Transport Diffusivities of Isopropyl Alcohol in UiO-66 Mhatre, Chinmay V. Wardzala, Jacob J. Shukla, Priyanka B. Agrawal, Mayank Johnson, J. Karl Nanomaterials (Basel) Article The UiO-6x family of metal-organic frameworks has been extensively studied for applications in chemical warfare agent (CWA) capture and destruction. An understanding of intrinsic transport phenomena, such as diffusion, is key to understanding experimental results and designing effective materials for CWA capture. However, the relatively large size of CWAs and their simulants makes diffusion in the small-pored pristine UiO-66 very slow and hence impractical to study directly with direct molecular simulations because of the time scales required. We used isopropanol (IPA) as a surrogate for CWAs to investigate the fundamental diffusion mechanisms of a polar molecule within pristine UiO-66. IPA can form hydrogen bonds with the [Formula: see text]-OH groups bound to the metal oxide clusters in UiO-66, similar to some CWAs, and can be studied by direct molecular dynamics simulations. We report self, corrected, and transport diffusivities of IPA in pristine UiO-66 as a function of loading. Our calculations highlight the importance of the accurate modeling of the hydrogen bonding interactions on diffusivities, with about an order of magnitude decrease in diffusion coefficients when the hydrogen bonding between IPA and the [Formula: see text]-OH groups is included. We found that a fraction of the IPA molecules have very low mobility during the course of a simulation, while a small fraction are highly mobile, exhibiting mean square displacements far greater than the ensemble average. MDPI 2023-06-02 /pmc/articles/PMC10254453/ /pubmed/37299696 http://dx.doi.org/10.3390/nano13111793 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Mhatre, Chinmay V. Wardzala, Jacob J. Shukla, Priyanka B. Agrawal, Mayank Johnson, J. Karl Calculation of Self, Corrected, and Transport Diffusivities of Isopropyl Alcohol in UiO-66 |
title | Calculation of Self, Corrected, and Transport Diffusivities of Isopropyl Alcohol in UiO-66 |
title_full | Calculation of Self, Corrected, and Transport Diffusivities of Isopropyl Alcohol in UiO-66 |
title_fullStr | Calculation of Self, Corrected, and Transport Diffusivities of Isopropyl Alcohol in UiO-66 |
title_full_unstemmed | Calculation of Self, Corrected, and Transport Diffusivities of Isopropyl Alcohol in UiO-66 |
title_short | Calculation of Self, Corrected, and Transport Diffusivities of Isopropyl Alcohol in UiO-66 |
title_sort | calculation of self, corrected, and transport diffusivities of isopropyl alcohol in uio-66 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10254453/ https://www.ncbi.nlm.nih.gov/pubmed/37299696 http://dx.doi.org/10.3390/nano13111793 |
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