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How Accurate Can Crystal Structure Predictions Be for High-Energy Molecular Crystals?
Molecular crystals have shallow potential energy landscapes, with multiple local minima separated by very small differences in total energy. Predicting molecular packing and molecular conformation in the crystal generally requires ab initio methods of high accuracy, especially when polymorphs are in...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10254755/ https://www.ncbi.nlm.nih.gov/pubmed/37298947 http://dx.doi.org/10.3390/molecules28114471 |
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author | Bidault, Xavier Chaudhuri, Santanu |
author_facet | Bidault, Xavier Chaudhuri, Santanu |
author_sort | Bidault, Xavier |
collection | PubMed |
description | Molecular crystals have shallow potential energy landscapes, with multiple local minima separated by very small differences in total energy. Predicting molecular packing and molecular conformation in the crystal generally requires ab initio methods of high accuracy, especially when polymorphs are involved. We used dispersion-corrected density functional theory (DFT-D) to assess the capabilities of an evolutionary algorithm (EA) for the crystal structure prediction (CSP) of well-known but challenging high-energy molecular crystals (HMX, RDX, CL-20, and FOX-7). While providing the EA with the experimental conformation of the molecule quickly re-discovers the experimental packing, it is more realistic to start instead from a naïve, flat, or neutral initial conformation, which reflects the limited experimental knowledge we generally have in the computational design of molecular crystals. By doing so, and using fully flexible molecules in fully variable unit cells, we show that the experimental structures can be predicted in fewer than 20 generations. Nonetheless, one must be aware that some molecular crystals have naturally hindered evolutions, requiring as many attempts as there are space groups of interest to predict their structures, and some may require the accuracy of all-electron calculations to discriminate between closely ranked structures. To save resources in this computationally demanding process, we showed that a hybrid xTB/DFT-D approach could be considered in a subsequent study to push the limits of CSP beyond 200+ atoms and for cocrystals. |
format | Online Article Text |
id | pubmed-10254755 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-102547552023-06-10 How Accurate Can Crystal Structure Predictions Be for High-Energy Molecular Crystals? Bidault, Xavier Chaudhuri, Santanu Molecules Article Molecular crystals have shallow potential energy landscapes, with multiple local minima separated by very small differences in total energy. Predicting molecular packing and molecular conformation in the crystal generally requires ab initio methods of high accuracy, especially when polymorphs are involved. We used dispersion-corrected density functional theory (DFT-D) to assess the capabilities of an evolutionary algorithm (EA) for the crystal structure prediction (CSP) of well-known but challenging high-energy molecular crystals (HMX, RDX, CL-20, and FOX-7). While providing the EA with the experimental conformation of the molecule quickly re-discovers the experimental packing, it is more realistic to start instead from a naïve, flat, or neutral initial conformation, which reflects the limited experimental knowledge we generally have in the computational design of molecular crystals. By doing so, and using fully flexible molecules in fully variable unit cells, we show that the experimental structures can be predicted in fewer than 20 generations. Nonetheless, one must be aware that some molecular crystals have naturally hindered evolutions, requiring as many attempts as there are space groups of interest to predict their structures, and some may require the accuracy of all-electron calculations to discriminate between closely ranked structures. To save resources in this computationally demanding process, we showed that a hybrid xTB/DFT-D approach could be considered in a subsequent study to push the limits of CSP beyond 200+ atoms and for cocrystals. MDPI 2023-05-31 /pmc/articles/PMC10254755/ /pubmed/37298947 http://dx.doi.org/10.3390/molecules28114471 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Bidault, Xavier Chaudhuri, Santanu How Accurate Can Crystal Structure Predictions Be for High-Energy Molecular Crystals? |
title | How Accurate Can Crystal Structure Predictions Be for High-Energy Molecular Crystals? |
title_full | How Accurate Can Crystal Structure Predictions Be for High-Energy Molecular Crystals? |
title_fullStr | How Accurate Can Crystal Structure Predictions Be for High-Energy Molecular Crystals? |
title_full_unstemmed | How Accurate Can Crystal Structure Predictions Be for High-Energy Molecular Crystals? |
title_short | How Accurate Can Crystal Structure Predictions Be for High-Energy Molecular Crystals? |
title_sort | how accurate can crystal structure predictions be for high-energy molecular crystals? |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10254755/ https://www.ncbi.nlm.nih.gov/pubmed/37298947 http://dx.doi.org/10.3390/molecules28114471 |
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