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Lifelong nnU-Net: a framework for standardized medical continual learning

As the enthusiasm surrounding Deep Learning grows, both medical practitioners and regulatory bodies are exploring ways to safely introduce image segmentation in clinical practice. One frontier to overcome when translating promising research into the clinical open world is the shift from static to co...

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Autores principales: González, Camila, Ranem, Amin, Pinto dos Santos, Daniel, Othman, Ahmed, Mukhopadhyay, Anirban
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10256748/
https://www.ncbi.nlm.nih.gov/pubmed/37296233
http://dx.doi.org/10.1038/s41598-023-34484-2
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author González, Camila
Ranem, Amin
Pinto dos Santos, Daniel
Othman, Ahmed
Mukhopadhyay, Anirban
author_facet González, Camila
Ranem, Amin
Pinto dos Santos, Daniel
Othman, Ahmed
Mukhopadhyay, Anirban
author_sort González, Camila
collection PubMed
description As the enthusiasm surrounding Deep Learning grows, both medical practitioners and regulatory bodies are exploring ways to safely introduce image segmentation in clinical practice. One frontier to overcome when translating promising research into the clinical open world is the shift from static to continual learning. Continual learning, the practice of training models throughout their lifecycle, is seeing growing interest but is still in its infancy in healthcare. We present Lifelong nnU-Net, a standardized framework that places continual segmentation at the hands of researchers and clinicians. Built on top of the nnU-Net—widely regarded as the best-performing segmenter for multiple medical applications—and equipped with all necessary modules for training and testing models sequentially, we ensure broad applicability and lower the barrier to evaluating new methods in a continual fashion. Our benchmark results across three medical segmentation use cases and five continual learning methods give a comprehensive outlook on the current state of the field and signify a first reproducible benchmark.
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spelling pubmed-102567482023-06-11 Lifelong nnU-Net: a framework for standardized medical continual learning González, Camila Ranem, Amin Pinto dos Santos, Daniel Othman, Ahmed Mukhopadhyay, Anirban Sci Rep Article As the enthusiasm surrounding Deep Learning grows, both medical practitioners and regulatory bodies are exploring ways to safely introduce image segmentation in clinical practice. One frontier to overcome when translating promising research into the clinical open world is the shift from static to continual learning. Continual learning, the practice of training models throughout their lifecycle, is seeing growing interest but is still in its infancy in healthcare. We present Lifelong nnU-Net, a standardized framework that places continual segmentation at the hands of researchers and clinicians. Built on top of the nnU-Net—widely regarded as the best-performing segmenter for multiple medical applications—and equipped with all necessary modules for training and testing models sequentially, we ensure broad applicability and lower the barrier to evaluating new methods in a continual fashion. Our benchmark results across three medical segmentation use cases and five continual learning methods give a comprehensive outlook on the current state of the field and signify a first reproducible benchmark. Nature Publishing Group UK 2023-06-09 /pmc/articles/PMC10256748/ /pubmed/37296233 http://dx.doi.org/10.1038/s41598-023-34484-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
González, Camila
Ranem, Amin
Pinto dos Santos, Daniel
Othman, Ahmed
Mukhopadhyay, Anirban
Lifelong nnU-Net: a framework for standardized medical continual learning
title Lifelong nnU-Net: a framework for standardized medical continual learning
title_full Lifelong nnU-Net: a framework for standardized medical continual learning
title_fullStr Lifelong nnU-Net: a framework for standardized medical continual learning
title_full_unstemmed Lifelong nnU-Net: a framework for standardized medical continual learning
title_short Lifelong nnU-Net: a framework for standardized medical continual learning
title_sort lifelong nnu-net: a framework for standardized medical continual learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10256748/
https://www.ncbi.nlm.nih.gov/pubmed/37296233
http://dx.doi.org/10.1038/s41598-023-34484-2
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