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Application of self-supervised approaches to the classification of X-ray diffraction spectra during phase transitions

Spectroscopy and X-ray diffraction techniques encode ample information on investigated samples. The ability of rapidly and accurately extracting these enhances the means to steer the experiment, as well as the understanding of the underlying processes governing the experiment. It improves the effici...

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Autores principales: Sun, Yue, Brockhauser, Sandor, Hegedűs, Péter, Plückthun, Christian, Gelisio, Luca, Ferreira de Lima, Danilo Enoque
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10256752/
https://www.ncbi.nlm.nih.gov/pubmed/37296300
http://dx.doi.org/10.1038/s41598-023-36456-y
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author Sun, Yue
Brockhauser, Sandor
Hegedűs, Péter
Plückthun, Christian
Gelisio, Luca
Ferreira de Lima, Danilo Enoque
author_facet Sun, Yue
Brockhauser, Sandor
Hegedűs, Péter
Plückthun, Christian
Gelisio, Luca
Ferreira de Lima, Danilo Enoque
author_sort Sun, Yue
collection PubMed
description Spectroscopy and X-ray diffraction techniques encode ample information on investigated samples. The ability of rapidly and accurately extracting these enhances the means to steer the experiment, as well as the understanding of the underlying processes governing the experiment. It improves the efficiency of the experiment, and maximizes the scientific outcome. To address this, we introduce and validate three frameworks based on self-supervised learning which are capable of classifying 1D spectral curves using data transformations preserving the scientific content and only a small amount of data labeled by domain experts. In particular, in this work we focus on the identification of phase transitions in samples investigated by x-ray powder diffraction. We demonstrate that the three frameworks, based either on relational reasoning, contrastive learning, or a combination of the two, are capable of accurately identifying phase transitions. Furthermore, we discuss in detail the selection of data augmentation techniques, crucial to ensure that scientifically meaningful information is retained.
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spelling pubmed-102567522023-06-11 Application of self-supervised approaches to the classification of X-ray diffraction spectra during phase transitions Sun, Yue Brockhauser, Sandor Hegedűs, Péter Plückthun, Christian Gelisio, Luca Ferreira de Lima, Danilo Enoque Sci Rep Article Spectroscopy and X-ray diffraction techniques encode ample information on investigated samples. The ability of rapidly and accurately extracting these enhances the means to steer the experiment, as well as the understanding of the underlying processes governing the experiment. It improves the efficiency of the experiment, and maximizes the scientific outcome. To address this, we introduce and validate three frameworks based on self-supervised learning which are capable of classifying 1D spectral curves using data transformations preserving the scientific content and only a small amount of data labeled by domain experts. In particular, in this work we focus on the identification of phase transitions in samples investigated by x-ray powder diffraction. We demonstrate that the three frameworks, based either on relational reasoning, contrastive learning, or a combination of the two, are capable of accurately identifying phase transitions. Furthermore, we discuss in detail the selection of data augmentation techniques, crucial to ensure that scientifically meaningful information is retained. Nature Publishing Group UK 2023-06-09 /pmc/articles/PMC10256752/ /pubmed/37296300 http://dx.doi.org/10.1038/s41598-023-36456-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Sun, Yue
Brockhauser, Sandor
Hegedűs, Péter
Plückthun, Christian
Gelisio, Luca
Ferreira de Lima, Danilo Enoque
Application of self-supervised approaches to the classification of X-ray diffraction spectra during phase transitions
title Application of self-supervised approaches to the classification of X-ray diffraction spectra during phase transitions
title_full Application of self-supervised approaches to the classification of X-ray diffraction spectra during phase transitions
title_fullStr Application of self-supervised approaches to the classification of X-ray diffraction spectra during phase transitions
title_full_unstemmed Application of self-supervised approaches to the classification of X-ray diffraction spectra during phase transitions
title_short Application of self-supervised approaches to the classification of X-ray diffraction spectra during phase transitions
title_sort application of self-supervised approaches to the classification of x-ray diffraction spectra during phase transitions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10256752/
https://www.ncbi.nlm.nih.gov/pubmed/37296300
http://dx.doi.org/10.1038/s41598-023-36456-y
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