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Discovery of senolytics using machine learning

Cellular senescence is a stress response involved in ageing and diverse disease processes including cancer, type-2 diabetes, osteoarthritis and viral infection. Despite growing interest in targeted elimination of senescent cells, only few senolytics are known due to the lack of well-characterised mo...

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Autores principales: Smer-Barreto, Vanessa, Quintanilla, Andrea, Elliott, Richard J. R., Dawson, John C., Sun, Jiugeng, Campa, Víctor M., Lorente-Macías, Álvaro, Unciti-Broceta, Asier, Carragher, Neil O., Acosta, Juan Carlos, Oyarzún, Diego A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10257182/
https://www.ncbi.nlm.nih.gov/pubmed/37301862
http://dx.doi.org/10.1038/s41467-023-39120-1
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author Smer-Barreto, Vanessa
Quintanilla, Andrea
Elliott, Richard J. R.
Dawson, John C.
Sun, Jiugeng
Campa, Víctor M.
Lorente-Macías, Álvaro
Unciti-Broceta, Asier
Carragher, Neil O.
Acosta, Juan Carlos
Oyarzún, Diego A.
author_facet Smer-Barreto, Vanessa
Quintanilla, Andrea
Elliott, Richard J. R.
Dawson, John C.
Sun, Jiugeng
Campa, Víctor M.
Lorente-Macías, Álvaro
Unciti-Broceta, Asier
Carragher, Neil O.
Acosta, Juan Carlos
Oyarzún, Diego A.
author_sort Smer-Barreto, Vanessa
collection PubMed
description Cellular senescence is a stress response involved in ageing and diverse disease processes including cancer, type-2 diabetes, osteoarthritis and viral infection. Despite growing interest in targeted elimination of senescent cells, only few senolytics are known due to the lack of well-characterised molecular targets. Here, we report the discovery of three senolytics using cost-effective machine learning algorithms trained solely on published data. We computationally screened various chemical libraries and validated the senolytic action of ginkgetin, periplocin and oleandrin in human cell lines under various modalities of senescence. The compounds have potency comparable to known senolytics, and we show that oleandrin has improved potency over its target as compared to best-in-class alternatives. Our approach led to several hundred-fold reduction in drug screening costs and demonstrates that artificial intelligence can take maximum advantage of small and heterogeneous drug screening data, paving the way for new open science approaches to early-stage drug discovery.
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spelling pubmed-102571822023-06-12 Discovery of senolytics using machine learning Smer-Barreto, Vanessa Quintanilla, Andrea Elliott, Richard J. R. Dawson, John C. Sun, Jiugeng Campa, Víctor M. Lorente-Macías, Álvaro Unciti-Broceta, Asier Carragher, Neil O. Acosta, Juan Carlos Oyarzún, Diego A. Nat Commun Article Cellular senescence is a stress response involved in ageing and diverse disease processes including cancer, type-2 diabetes, osteoarthritis and viral infection. Despite growing interest in targeted elimination of senescent cells, only few senolytics are known due to the lack of well-characterised molecular targets. Here, we report the discovery of three senolytics using cost-effective machine learning algorithms trained solely on published data. We computationally screened various chemical libraries and validated the senolytic action of ginkgetin, periplocin and oleandrin in human cell lines under various modalities of senescence. The compounds have potency comparable to known senolytics, and we show that oleandrin has improved potency over its target as compared to best-in-class alternatives. Our approach led to several hundred-fold reduction in drug screening costs and demonstrates that artificial intelligence can take maximum advantage of small and heterogeneous drug screening data, paving the way for new open science approaches to early-stage drug discovery. Nature Publishing Group UK 2023-06-10 /pmc/articles/PMC10257182/ /pubmed/37301862 http://dx.doi.org/10.1038/s41467-023-39120-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Smer-Barreto, Vanessa
Quintanilla, Andrea
Elliott, Richard J. R.
Dawson, John C.
Sun, Jiugeng
Campa, Víctor M.
Lorente-Macías, Álvaro
Unciti-Broceta, Asier
Carragher, Neil O.
Acosta, Juan Carlos
Oyarzún, Diego A.
Discovery of senolytics using machine learning
title Discovery of senolytics using machine learning
title_full Discovery of senolytics using machine learning
title_fullStr Discovery of senolytics using machine learning
title_full_unstemmed Discovery of senolytics using machine learning
title_short Discovery of senolytics using machine learning
title_sort discovery of senolytics using machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10257182/
https://www.ncbi.nlm.nih.gov/pubmed/37301862
http://dx.doi.org/10.1038/s41467-023-39120-1
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