Cargando…

A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone

Oxepinone rings represent one of structurally unusual motifs of natural products and the biosynthesis of oxepinones is not fully understood. 1,5-Seco-vibralactone (3) features an oxepinone motif and is a stable metabolite isolated from mycelial cultures of the mushroom Boreostereum vibrans. Cyclizat...

Descripción completa

Detalles Bibliográficos
Autores principales: Feng, Ke-Na, Zhang, Yue, Zhang, Mingfang, Yang, Yan-Long, Liu, Ji-Kai, Pan, Lifeng, Zeng, Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10257657/
https://www.ncbi.nlm.nih.gov/pubmed/37301868
http://dx.doi.org/10.1038/s41467-023-39108-x
_version_ 1785057346984083456
author Feng, Ke-Na
Zhang, Yue
Zhang, Mingfang
Yang, Yan-Long
Liu, Ji-Kai
Pan, Lifeng
Zeng, Ying
author_facet Feng, Ke-Na
Zhang, Yue
Zhang, Mingfang
Yang, Yan-Long
Liu, Ji-Kai
Pan, Lifeng
Zeng, Ying
author_sort Feng, Ke-Na
collection PubMed
description Oxepinone rings represent one of structurally unusual motifs of natural products and the biosynthesis of oxepinones is not fully understood. 1,5-Seco-vibralactone (3) features an oxepinone motif and is a stable metabolite isolated from mycelial cultures of the mushroom Boreostereum vibrans. Cyclization of 3 forms vibralactone (1) whose β-lactone-fused bicyclic core originates from 4-hydroxybenzoate, yet it remains elusive how 4-hydroxybenzoate is converted to 3 especially for the oxepinone ring construction in the biosynthesis of 1. In this work, using activity-guided fractionation together with proteomic analyses, we identify an NADPH/FAD-dependent monooxygenase VibO as the key enzyme performing a crucial ring-expansive oxygenation on the phenol ring to generate the oxepin-2-one structure of 3. The crystal structure of VibO reveals that it forms a dimeric phenol hydroxylase-like architecture featured with a unique substrate-binding pocket adjacent to the bound FAD. Computational modeling and solution studies provide insight into the likely VibO active site geometry, and suggest possible involvement of a flavin-C4a-OO(H) intermediate.
format Online
Article
Text
id pubmed-10257657
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-102576572023-06-12 A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone Feng, Ke-Na Zhang, Yue Zhang, Mingfang Yang, Yan-Long Liu, Ji-Kai Pan, Lifeng Zeng, Ying Nat Commun Article Oxepinone rings represent one of structurally unusual motifs of natural products and the biosynthesis of oxepinones is not fully understood. 1,5-Seco-vibralactone (3) features an oxepinone motif and is a stable metabolite isolated from mycelial cultures of the mushroom Boreostereum vibrans. Cyclization of 3 forms vibralactone (1) whose β-lactone-fused bicyclic core originates from 4-hydroxybenzoate, yet it remains elusive how 4-hydroxybenzoate is converted to 3 especially for the oxepinone ring construction in the biosynthesis of 1. In this work, using activity-guided fractionation together with proteomic analyses, we identify an NADPH/FAD-dependent monooxygenase VibO as the key enzyme performing a crucial ring-expansive oxygenation on the phenol ring to generate the oxepin-2-one structure of 3. The crystal structure of VibO reveals that it forms a dimeric phenol hydroxylase-like architecture featured with a unique substrate-binding pocket adjacent to the bound FAD. Computational modeling and solution studies provide insight into the likely VibO active site geometry, and suggest possible involvement of a flavin-C4a-OO(H) intermediate. Nature Publishing Group UK 2023-06-10 /pmc/articles/PMC10257657/ /pubmed/37301868 http://dx.doi.org/10.1038/s41467-023-39108-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Feng, Ke-Na
Zhang, Yue
Zhang, Mingfang
Yang, Yan-Long
Liu, Ji-Kai
Pan, Lifeng
Zeng, Ying
A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone
title A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone
title_full A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone
title_fullStr A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone
title_full_unstemmed A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone
title_short A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone
title_sort flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10257657/
https://www.ncbi.nlm.nih.gov/pubmed/37301868
http://dx.doi.org/10.1038/s41467-023-39108-x
work_keys_str_mv AT fengkena aflavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT zhangyue aflavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT zhangmingfang aflavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT yangyanlong aflavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT liujikai aflavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT panlifeng aflavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT zengying aflavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT fengkena flavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT zhangyue flavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT zhangmingfang flavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT yangyanlong flavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT liujikai flavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT panlifeng flavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone
AT zengying flavinmonooxygenasecatalyzingoxepinoneformationandthecompletebiosynthesisofvibralactone