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A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone
Oxepinone rings represent one of structurally unusual motifs of natural products and the biosynthesis of oxepinones is not fully understood. 1,5-Seco-vibralactone (3) features an oxepinone motif and is a stable metabolite isolated from mycelial cultures of the mushroom Boreostereum vibrans. Cyclizat...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10257657/ https://www.ncbi.nlm.nih.gov/pubmed/37301868 http://dx.doi.org/10.1038/s41467-023-39108-x |
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author | Feng, Ke-Na Zhang, Yue Zhang, Mingfang Yang, Yan-Long Liu, Ji-Kai Pan, Lifeng Zeng, Ying |
author_facet | Feng, Ke-Na Zhang, Yue Zhang, Mingfang Yang, Yan-Long Liu, Ji-Kai Pan, Lifeng Zeng, Ying |
author_sort | Feng, Ke-Na |
collection | PubMed |
description | Oxepinone rings represent one of structurally unusual motifs of natural products and the biosynthesis of oxepinones is not fully understood. 1,5-Seco-vibralactone (3) features an oxepinone motif and is a stable metabolite isolated from mycelial cultures of the mushroom Boreostereum vibrans. Cyclization of 3 forms vibralactone (1) whose β-lactone-fused bicyclic core originates from 4-hydroxybenzoate, yet it remains elusive how 4-hydroxybenzoate is converted to 3 especially for the oxepinone ring construction in the biosynthesis of 1. In this work, using activity-guided fractionation together with proteomic analyses, we identify an NADPH/FAD-dependent monooxygenase VibO as the key enzyme performing a crucial ring-expansive oxygenation on the phenol ring to generate the oxepin-2-one structure of 3. The crystal structure of VibO reveals that it forms a dimeric phenol hydroxylase-like architecture featured with a unique substrate-binding pocket adjacent to the bound FAD. Computational modeling and solution studies provide insight into the likely VibO active site geometry, and suggest possible involvement of a flavin-C4a-OO(H) intermediate. |
format | Online Article Text |
id | pubmed-10257657 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-102576572023-06-12 A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone Feng, Ke-Na Zhang, Yue Zhang, Mingfang Yang, Yan-Long Liu, Ji-Kai Pan, Lifeng Zeng, Ying Nat Commun Article Oxepinone rings represent one of structurally unusual motifs of natural products and the biosynthesis of oxepinones is not fully understood. 1,5-Seco-vibralactone (3) features an oxepinone motif and is a stable metabolite isolated from mycelial cultures of the mushroom Boreostereum vibrans. Cyclization of 3 forms vibralactone (1) whose β-lactone-fused bicyclic core originates from 4-hydroxybenzoate, yet it remains elusive how 4-hydroxybenzoate is converted to 3 especially for the oxepinone ring construction in the biosynthesis of 1. In this work, using activity-guided fractionation together with proteomic analyses, we identify an NADPH/FAD-dependent monooxygenase VibO as the key enzyme performing a crucial ring-expansive oxygenation on the phenol ring to generate the oxepin-2-one structure of 3. The crystal structure of VibO reveals that it forms a dimeric phenol hydroxylase-like architecture featured with a unique substrate-binding pocket adjacent to the bound FAD. Computational modeling and solution studies provide insight into the likely VibO active site geometry, and suggest possible involvement of a flavin-C4a-OO(H) intermediate. Nature Publishing Group UK 2023-06-10 /pmc/articles/PMC10257657/ /pubmed/37301868 http://dx.doi.org/10.1038/s41467-023-39108-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Feng, Ke-Na Zhang, Yue Zhang, Mingfang Yang, Yan-Long Liu, Ji-Kai Pan, Lifeng Zeng, Ying A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone |
title | A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone |
title_full | A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone |
title_fullStr | A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone |
title_full_unstemmed | A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone |
title_short | A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone |
title_sort | flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10257657/ https://www.ncbi.nlm.nih.gov/pubmed/37301868 http://dx.doi.org/10.1038/s41467-023-39108-x |
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