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Development and validation of a novel T cell proliferation-related prognostic model for predicting survival and immunotherapy benefits in melanoma
Background: T cell plays a crucial role in the occurrence and progression of Skin cutaneous melanoma (SKCM). This research aims to identify the actions of T cell proliferation-related genes (TRGs) on the prognosis and immunotherapy response of tumor patients. Method: The clinical manifestation and g...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10258015/ https://www.ncbi.nlm.nih.gov/pubmed/37227816 http://dx.doi.org/10.18632/aging.204748 |
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author | Chen, Jiajie Wang, Daiyue Chan, Shixin Yang, Qingqing Wang, Chen Wang, Xu Sun, Rui Gui, Yu Yu, Shuling Yang, Jinwei Zhang, Haoxue Zhang, Xiaomin Tang, Kechao Zhang, Huabing Liu, Shengxiu |
author_facet | Chen, Jiajie Wang, Daiyue Chan, Shixin Yang, Qingqing Wang, Chen Wang, Xu Sun, Rui Gui, Yu Yu, Shuling Yang, Jinwei Zhang, Haoxue Zhang, Xiaomin Tang, Kechao Zhang, Huabing Liu, Shengxiu |
author_sort | Chen, Jiajie |
collection | PubMed |
description | Background: T cell plays a crucial role in the occurrence and progression of Skin cutaneous melanoma (SKCM). This research aims to identify the actions of T cell proliferation-related genes (TRGs) on the prognosis and immunotherapy response of tumor patients. Method: The clinical manifestation and gene expression data of SKCM patients were obtained from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. T cell proliferation-related molecular subtypes were identified utilizing consensus clustering. Subsequently, Cox and Lasso regression analysis was conducted to identify six prognostic genes, and a prognostic signature was constructed. A series of experiments, such as qRT-PCR, Western blotting and CCK8 assay, were then conducted to verify the reliability of the six genes. Results: In this study, a grading system was established to forecast survival time and responses to immunotherapy, providing an overview of the tumoral immune landscape. Meanwhile, we identified six prognostic signature genes. Notably, we also found that C1RL protein may inhibit the growth of melanoma cell lines. Conclusion: The scoring system depending on six prognostic genes showed great efficiency in predicting survival time. The system could help to forecast prognosis of SKCM patients, characterize SKCM immunological condition, assess patient immunotherapy response. |
format | Online Article Text |
id | pubmed-10258015 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-102580152023-06-13 Development and validation of a novel T cell proliferation-related prognostic model for predicting survival and immunotherapy benefits in melanoma Chen, Jiajie Wang, Daiyue Chan, Shixin Yang, Qingqing Wang, Chen Wang, Xu Sun, Rui Gui, Yu Yu, Shuling Yang, Jinwei Zhang, Haoxue Zhang, Xiaomin Tang, Kechao Zhang, Huabing Liu, Shengxiu Aging (Albany NY) Research Paper Background: T cell plays a crucial role in the occurrence and progression of Skin cutaneous melanoma (SKCM). This research aims to identify the actions of T cell proliferation-related genes (TRGs) on the prognosis and immunotherapy response of tumor patients. Method: The clinical manifestation and gene expression data of SKCM patients were obtained from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. T cell proliferation-related molecular subtypes were identified utilizing consensus clustering. Subsequently, Cox and Lasso regression analysis was conducted to identify six prognostic genes, and a prognostic signature was constructed. A series of experiments, such as qRT-PCR, Western blotting and CCK8 assay, were then conducted to verify the reliability of the six genes. Results: In this study, a grading system was established to forecast survival time and responses to immunotherapy, providing an overview of the tumoral immune landscape. Meanwhile, we identified six prognostic signature genes. Notably, we also found that C1RL protein may inhibit the growth of melanoma cell lines. Conclusion: The scoring system depending on six prognostic genes showed great efficiency in predicting survival time. The system could help to forecast prognosis of SKCM patients, characterize SKCM immunological condition, assess patient immunotherapy response. Impact Journals 2023-05-24 /pmc/articles/PMC10258015/ /pubmed/37227816 http://dx.doi.org/10.18632/aging.204748 Text en Copyright: © 2023 Chen et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Chen, Jiajie Wang, Daiyue Chan, Shixin Yang, Qingqing Wang, Chen Wang, Xu Sun, Rui Gui, Yu Yu, Shuling Yang, Jinwei Zhang, Haoxue Zhang, Xiaomin Tang, Kechao Zhang, Huabing Liu, Shengxiu Development and validation of a novel T cell proliferation-related prognostic model for predicting survival and immunotherapy benefits in melanoma |
title | Development and validation of a novel T cell proliferation-related prognostic model for predicting survival and immunotherapy benefits in melanoma |
title_full | Development and validation of a novel T cell proliferation-related prognostic model for predicting survival and immunotherapy benefits in melanoma |
title_fullStr | Development and validation of a novel T cell proliferation-related prognostic model for predicting survival and immunotherapy benefits in melanoma |
title_full_unstemmed | Development and validation of a novel T cell proliferation-related prognostic model for predicting survival and immunotherapy benefits in melanoma |
title_short | Development and validation of a novel T cell proliferation-related prognostic model for predicting survival and immunotherapy benefits in melanoma |
title_sort | development and validation of a novel t cell proliferation-related prognostic model for predicting survival and immunotherapy benefits in melanoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10258015/ https://www.ncbi.nlm.nih.gov/pubmed/37227816 http://dx.doi.org/10.18632/aging.204748 |
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