Cargando…

Characteristic of molecular subtypes based on PANoptosis-related genes and experimental verification of hepatocellular carcinoma

Hepatocellular carcinoma (HCC) is a type of liver cancer that originates from liver cells. It is one of the most common types of liver cancer and a leading cause of cancer-related death worldwide. Early detection and treatment can improve the HCC prognosis. Therefore, it is necessary to further impr...

Descripción completa

Detalles Bibliográficos
Autores principales: Ren, Haitao, Kang, Na, Yin, Shuan, Xu, Chen, Qu, Tengfei, Dai, Dongdong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10258029/
https://www.ncbi.nlm.nih.gov/pubmed/37171396
http://dx.doi.org/10.18632/aging.204720
_version_ 1785057406181441536
author Ren, Haitao
Kang, Na
Yin, Shuan
Xu, Chen
Qu, Tengfei
Dai, Dongdong
author_facet Ren, Haitao
Kang, Na
Yin, Shuan
Xu, Chen
Qu, Tengfei
Dai, Dongdong
author_sort Ren, Haitao
collection PubMed
description Hepatocellular carcinoma (HCC) is a type of liver cancer that originates from liver cells. It is one of the most common types of liver cancer and a leading cause of cancer-related death worldwide. Early detection and treatment can improve the HCC prognosis. Therefore, it is necessary to further improve HCC markers and risk stratification. PANoptosome is a cytoplasmic polymer protein complex that regulates a proinflammatory programmed cell death pathway called “PANoptosis”. The role of PANoptosis in HCC remains unclear. In this study, the molecular changes of PANoptosis related genes (PAN-RGs) in HCC were systematically evaluated. We characterized the heterogeneity of HCC by using consensus clustering to identify two distinct subtypes. The two subtypes showed different survival rate, biological function, chemotherapy drug sensitivity and immune microenvironment. After identification of PAN-RG differential expression genes (DEGs), a prognostic model was established by Cox regression analysis using minimum absolute contraction and selection operator (LASSO), and its prognostic value was verified by Cox regression analysis, Kaplan-Meier curve and receiver operating characteristic (ROC) curve. Our own specimens were also used to further validate the prognostic significance and possible clinical value of the selected targets. Subsequently, we conducted a preliminary discussion on the reasons for the influence of the model on the prognosis through TME analysis, drug resistance analysis, TMB analysis and other studies. This study provides a new idea for individualized and precise treatment of HCC.
format Online
Article
Text
id pubmed-10258029
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Impact Journals
record_format MEDLINE/PubMed
spelling pubmed-102580292023-06-13 Characteristic of molecular subtypes based on PANoptosis-related genes and experimental verification of hepatocellular carcinoma Ren, Haitao Kang, Na Yin, Shuan Xu, Chen Qu, Tengfei Dai, Dongdong Aging (Albany NY) Research Paper Hepatocellular carcinoma (HCC) is a type of liver cancer that originates from liver cells. It is one of the most common types of liver cancer and a leading cause of cancer-related death worldwide. Early detection and treatment can improve the HCC prognosis. Therefore, it is necessary to further improve HCC markers and risk stratification. PANoptosome is a cytoplasmic polymer protein complex that regulates a proinflammatory programmed cell death pathway called “PANoptosis”. The role of PANoptosis in HCC remains unclear. In this study, the molecular changes of PANoptosis related genes (PAN-RGs) in HCC were systematically evaluated. We characterized the heterogeneity of HCC by using consensus clustering to identify two distinct subtypes. The two subtypes showed different survival rate, biological function, chemotherapy drug sensitivity and immune microenvironment. After identification of PAN-RG differential expression genes (DEGs), a prognostic model was established by Cox regression analysis using minimum absolute contraction and selection operator (LASSO), and its prognostic value was verified by Cox regression analysis, Kaplan-Meier curve and receiver operating characteristic (ROC) curve. Our own specimens were also used to further validate the prognostic significance and possible clinical value of the selected targets. Subsequently, we conducted a preliminary discussion on the reasons for the influence of the model on the prognosis through TME analysis, drug resistance analysis, TMB analysis and other studies. This study provides a new idea for individualized and precise treatment of HCC. Impact Journals 2023-05-12 /pmc/articles/PMC10258029/ /pubmed/37171396 http://dx.doi.org/10.18632/aging.204720 Text en Copyright: © 2023 Ren et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Ren, Haitao
Kang, Na
Yin, Shuan
Xu, Chen
Qu, Tengfei
Dai, Dongdong
Characteristic of molecular subtypes based on PANoptosis-related genes and experimental verification of hepatocellular carcinoma
title Characteristic of molecular subtypes based on PANoptosis-related genes and experimental verification of hepatocellular carcinoma
title_full Characteristic of molecular subtypes based on PANoptosis-related genes and experimental verification of hepatocellular carcinoma
title_fullStr Characteristic of molecular subtypes based on PANoptosis-related genes and experimental verification of hepatocellular carcinoma
title_full_unstemmed Characteristic of molecular subtypes based on PANoptosis-related genes and experimental verification of hepatocellular carcinoma
title_short Characteristic of molecular subtypes based on PANoptosis-related genes and experimental verification of hepatocellular carcinoma
title_sort characteristic of molecular subtypes based on panoptosis-related genes and experimental verification of hepatocellular carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10258029/
https://www.ncbi.nlm.nih.gov/pubmed/37171396
http://dx.doi.org/10.18632/aging.204720
work_keys_str_mv AT renhaitao characteristicofmolecularsubtypesbasedonpanoptosisrelatedgenesandexperimentalverificationofhepatocellularcarcinoma
AT kangna characteristicofmolecularsubtypesbasedonpanoptosisrelatedgenesandexperimentalverificationofhepatocellularcarcinoma
AT yinshuan characteristicofmolecularsubtypesbasedonpanoptosisrelatedgenesandexperimentalverificationofhepatocellularcarcinoma
AT xuchen characteristicofmolecularsubtypesbasedonpanoptosisrelatedgenesandexperimentalverificationofhepatocellularcarcinoma
AT qutengfei characteristicofmolecularsubtypesbasedonpanoptosisrelatedgenesandexperimentalverificationofhepatocellularcarcinoma
AT daidongdong characteristicofmolecularsubtypesbasedonpanoptosisrelatedgenesandexperimentalverificationofhepatocellularcarcinoma