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Deciphering Structural and Dynamical Properties of Hydrated Cobalt Porphyrins via Ab Initio Quantum Mechanical Charge Field Molecular Dynamics Simulation
[Image: see text] The present study successfully implemented the ab initio quantum mechanical charge field molecular dynamics (QMCF MD) formalism for the investigation of structural and dynamical properties of hydrated cobalt–porphyrin complexes. Considering the significance of cobalt ions in biolog...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10258806/ https://www.ncbi.nlm.nih.gov/pubmed/37220311 http://dx.doi.org/10.1021/acs.jpcb.3c00837 |
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author | Jamal, Sehrish Naz, Zobia Moin, Syed Tarique Hofer, Thomas S. |
author_facet | Jamal, Sehrish Naz, Zobia Moin, Syed Tarique Hofer, Thomas S. |
author_sort | Jamal, Sehrish |
collection | PubMed |
description | [Image: see text] The present study successfully implemented the ab initio quantum mechanical charge field molecular dynamics (QMCF MD) formalism for the investigation of structural and dynamical properties of hydrated cobalt–porphyrin complexes. Considering the significance of cobalt ions in biological systems (for instance, vitamin B12), which reportedly incorporate cobalt ions in a d6, low spin, +3 state chelated in the corrin ring, an analog of porphyrin, the current study is focused on cobalt in the oxidation states +2 and +3 bound to the parent porphyrin lead structures embedded in an aqueous solution. These cobalt–porphyrin complexes were investigated in terms of their structural and dynamical properties at the quantum chemical level. The structural attributes of these hydrated complexes revealed the contrasting features of the water binding to these solutes, including a detailed evaluation of the associated dynamics. The study also yielded notable findings in regard to the respective electronic configurations vs coordination, which suggested that Co(II)-POR possesses a 5-fold square pyramidal coordination geometry in an aqueous solution containing the metal ion coordinating to four nitrogen atoms of the porphyrin ring and one axial water as the fifth ligand. On the other hand, high-spin Co(III)-POR was hypothesized to be more stable due to the smaller size-to-charge ratio of the cobalt ion, but the high-spin complex demonstrated unstable structural and dynamical behavior. However, the corresponding properties of the hydrated Co(III)(LS)-POR revealed a stable structure in an aqueous solution, thus suggesting the Co(III) ion to be in a low-spin state when bound to the porphyrin ring. Moreover, the structural and dynamical data were augmented by computing the free energy of water binding to the cobalt ions and the solvent-accessible surface area, which provide further information on thermochemical properties of the metal–water interaction and the hydrogen bonding potential of the porphyrin ring in these hydrated systems. |
format | Online Article Text |
id | pubmed-10258806 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-102588062023-06-13 Deciphering Structural and Dynamical Properties of Hydrated Cobalt Porphyrins via Ab Initio Quantum Mechanical Charge Field Molecular Dynamics Simulation Jamal, Sehrish Naz, Zobia Moin, Syed Tarique Hofer, Thomas S. J Phys Chem B [Image: see text] The present study successfully implemented the ab initio quantum mechanical charge field molecular dynamics (QMCF MD) formalism for the investigation of structural and dynamical properties of hydrated cobalt–porphyrin complexes. Considering the significance of cobalt ions in biological systems (for instance, vitamin B12), which reportedly incorporate cobalt ions in a d6, low spin, +3 state chelated in the corrin ring, an analog of porphyrin, the current study is focused on cobalt in the oxidation states +2 and +3 bound to the parent porphyrin lead structures embedded in an aqueous solution. These cobalt–porphyrin complexes were investigated in terms of their structural and dynamical properties at the quantum chemical level. The structural attributes of these hydrated complexes revealed the contrasting features of the water binding to these solutes, including a detailed evaluation of the associated dynamics. The study also yielded notable findings in regard to the respective electronic configurations vs coordination, which suggested that Co(II)-POR possesses a 5-fold square pyramidal coordination geometry in an aqueous solution containing the metal ion coordinating to four nitrogen atoms of the porphyrin ring and one axial water as the fifth ligand. On the other hand, high-spin Co(III)-POR was hypothesized to be more stable due to the smaller size-to-charge ratio of the cobalt ion, but the high-spin complex demonstrated unstable structural and dynamical behavior. However, the corresponding properties of the hydrated Co(III)(LS)-POR revealed a stable structure in an aqueous solution, thus suggesting the Co(III) ion to be in a low-spin state when bound to the porphyrin ring. Moreover, the structural and dynamical data were augmented by computing the free energy of water binding to the cobalt ions and the solvent-accessible surface area, which provide further information on thermochemical properties of the metal–water interaction and the hydrogen bonding potential of the porphyrin ring in these hydrated systems. American Chemical Society 2023-05-23 /pmc/articles/PMC10258806/ /pubmed/37220311 http://dx.doi.org/10.1021/acs.jpcb.3c00837 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Jamal, Sehrish Naz, Zobia Moin, Syed Tarique Hofer, Thomas S. Deciphering Structural and Dynamical Properties of Hydrated Cobalt Porphyrins via Ab Initio Quantum Mechanical Charge Field Molecular Dynamics Simulation |
title | Deciphering Structural
and Dynamical Properties of
Hydrated Cobalt Porphyrins via Ab Initio Quantum Mechanical Charge
Field Molecular Dynamics Simulation |
title_full | Deciphering Structural
and Dynamical Properties of
Hydrated Cobalt Porphyrins via Ab Initio Quantum Mechanical Charge
Field Molecular Dynamics Simulation |
title_fullStr | Deciphering Structural
and Dynamical Properties of
Hydrated Cobalt Porphyrins via Ab Initio Quantum Mechanical Charge
Field Molecular Dynamics Simulation |
title_full_unstemmed | Deciphering Structural
and Dynamical Properties of
Hydrated Cobalt Porphyrins via Ab Initio Quantum Mechanical Charge
Field Molecular Dynamics Simulation |
title_short | Deciphering Structural
and Dynamical Properties of
Hydrated Cobalt Porphyrins via Ab Initio Quantum Mechanical Charge
Field Molecular Dynamics Simulation |
title_sort | deciphering structural
and dynamical properties of
hydrated cobalt porphyrins via ab initio quantum mechanical charge
field molecular dynamics simulation |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10258806/ https://www.ncbi.nlm.nih.gov/pubmed/37220311 http://dx.doi.org/10.1021/acs.jpcb.3c00837 |
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