Cargando…
OTHR-04. DEVELOPMENT OF A FUNCTIONAL PLATFORM FOR REAL-TIME PERSONALIZED DRUG SENSITIVITY PROFILING OF PATIENT-DERIVED 3D FRESH TUMOR TISSUE CULTURES IN THE PEDIATRIC PRECISION ONCOLOGY PROGRAM INFORM
The international precision oncology program INFORM enrolls relapsed/refractory pediatric cancer patients for comprehensive molecular analysis. We report a two-year pilot study implementing ex vivo drug sensitivity profiling (DSP) using a library of 75-78 clinically relevant drugs. We included 132 v...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10259891/ http://dx.doi.org/10.1093/neuonc/noad073.286 |
_version_ | 1785057738728931328 |
---|---|
author | Peterziel, Heike Jamaladdin, Nora ElHarouni, Dina Gerloff, Xenia F Herter, Sonja Fiesel, Petra Berker, Yannick Blattner-Johnson, Mirjam Schramm, Kathrin Jones, Barbara C Reuss, David Turunen, Laura Friedenauer, Aileen Holland-Letz, Tim Sill, Martin Weiser, Lena Previti, Christopher Balasubramanian, Gnanaprakash Gerber, Nicolas U Gojo, Johannes Hutter, Caroline Øra, Ingrid Lohi, Olli Kattamis, Antonis de Wilde, Bram Westermann, Frank Tippelt, Stephan Graf, Norbert Nathrath, Michaela Sparber-Sauer, Monika Sehested, Astrid Kramm, Christof M Dirksen, Uta Kallioniemi, Olli Pfister, Stefan M van Tilburg, Cornelis M Jones, David T W Saarela, Jani Pietiäinen, Vilja Jäger, Natalie Schlesner, Matthias Kopp-Schneider, Annette Oppermann, Sina Milde, Till Witt, Olaf Oehme, Ina |
author_facet | Peterziel, Heike Jamaladdin, Nora ElHarouni, Dina Gerloff, Xenia F Herter, Sonja Fiesel, Petra Berker, Yannick Blattner-Johnson, Mirjam Schramm, Kathrin Jones, Barbara C Reuss, David Turunen, Laura Friedenauer, Aileen Holland-Letz, Tim Sill, Martin Weiser, Lena Previti, Christopher Balasubramanian, Gnanaprakash Gerber, Nicolas U Gojo, Johannes Hutter, Caroline Øra, Ingrid Lohi, Olli Kattamis, Antonis de Wilde, Bram Westermann, Frank Tippelt, Stephan Graf, Norbert Nathrath, Michaela Sparber-Sauer, Monika Sehested, Astrid Kramm, Christof M Dirksen, Uta Kallioniemi, Olli Pfister, Stefan M van Tilburg, Cornelis M Jones, David T W Saarela, Jani Pietiäinen, Vilja Jäger, Natalie Schlesner, Matthias Kopp-Schneider, Annette Oppermann, Sina Milde, Till Witt, Olaf Oehme, Ina |
author_sort | Peterziel, Heike |
collection | PubMed |
description | The international precision oncology program INFORM enrolls relapsed/refractory pediatric cancer patients for comprehensive molecular analysis. We report a two-year pilot study implementing ex vivo drug sensitivity profiling (DSP) using a library of 75-78 clinically relevant drugs. We included 132 viable tumor samples from 35 pediatric oncology centers in seven countries. DSP was conducted on multicellular fresh tumor tissue spheroid cultures in 384-well plates with an overall mean processing time of three weeks. In 89 cases (67%), sufficient viable tissue was received; 69 (78%) passed internal quality controls. The DSP results matched the identified molecular targets, including BRAF, ALK, MET and TP53 status. Drug vulnerabilities were identified in 80% of cases lacking actionable (very) high-evidence molecular events, adding value to the molecular data. Striking parallels between clinical courses and the DSP results were observed in selected patients. Overall, DSP in clinical real-time is feasible in international multicenter precision oncology programs. |
format | Online Article Text |
id | pubmed-10259891 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102598912023-06-13 OTHR-04. DEVELOPMENT OF A FUNCTIONAL PLATFORM FOR REAL-TIME PERSONALIZED DRUG SENSITIVITY PROFILING OF PATIENT-DERIVED 3D FRESH TUMOR TISSUE CULTURES IN THE PEDIATRIC PRECISION ONCOLOGY PROGRAM INFORM Peterziel, Heike Jamaladdin, Nora ElHarouni, Dina Gerloff, Xenia F Herter, Sonja Fiesel, Petra Berker, Yannick Blattner-Johnson, Mirjam Schramm, Kathrin Jones, Barbara C Reuss, David Turunen, Laura Friedenauer, Aileen Holland-Letz, Tim Sill, Martin Weiser, Lena Previti, Christopher Balasubramanian, Gnanaprakash Gerber, Nicolas U Gojo, Johannes Hutter, Caroline Øra, Ingrid Lohi, Olli Kattamis, Antonis de Wilde, Bram Westermann, Frank Tippelt, Stephan Graf, Norbert Nathrath, Michaela Sparber-Sauer, Monika Sehested, Astrid Kramm, Christof M Dirksen, Uta Kallioniemi, Olli Pfister, Stefan M van Tilburg, Cornelis M Jones, David T W Saarela, Jani Pietiäinen, Vilja Jäger, Natalie Schlesner, Matthias Kopp-Schneider, Annette Oppermann, Sina Milde, Till Witt, Olaf Oehme, Ina Neuro Oncol Final Category: Other (Not Fitting in any Other Category) - OTHR The international precision oncology program INFORM enrolls relapsed/refractory pediatric cancer patients for comprehensive molecular analysis. We report a two-year pilot study implementing ex vivo drug sensitivity profiling (DSP) using a library of 75-78 clinically relevant drugs. We included 132 viable tumor samples from 35 pediatric oncology centers in seven countries. DSP was conducted on multicellular fresh tumor tissue spheroid cultures in 384-well plates with an overall mean processing time of three weeks. In 89 cases (67%), sufficient viable tissue was received; 69 (78%) passed internal quality controls. The DSP results matched the identified molecular targets, including BRAF, ALK, MET and TP53 status. Drug vulnerabilities were identified in 80% of cases lacking actionable (very) high-evidence molecular events, adding value to the molecular data. Striking parallels between clinical courses and the DSP results were observed in selected patients. Overall, DSP in clinical real-time is feasible in international multicenter precision oncology programs. Oxford University Press 2023-06-12 /pmc/articles/PMC10259891/ http://dx.doi.org/10.1093/neuonc/noad073.286 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of the Society for Neuro-Oncology. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Final Category: Other (Not Fitting in any Other Category) - OTHR Peterziel, Heike Jamaladdin, Nora ElHarouni, Dina Gerloff, Xenia F Herter, Sonja Fiesel, Petra Berker, Yannick Blattner-Johnson, Mirjam Schramm, Kathrin Jones, Barbara C Reuss, David Turunen, Laura Friedenauer, Aileen Holland-Letz, Tim Sill, Martin Weiser, Lena Previti, Christopher Balasubramanian, Gnanaprakash Gerber, Nicolas U Gojo, Johannes Hutter, Caroline Øra, Ingrid Lohi, Olli Kattamis, Antonis de Wilde, Bram Westermann, Frank Tippelt, Stephan Graf, Norbert Nathrath, Michaela Sparber-Sauer, Monika Sehested, Astrid Kramm, Christof M Dirksen, Uta Kallioniemi, Olli Pfister, Stefan M van Tilburg, Cornelis M Jones, David T W Saarela, Jani Pietiäinen, Vilja Jäger, Natalie Schlesner, Matthias Kopp-Schneider, Annette Oppermann, Sina Milde, Till Witt, Olaf Oehme, Ina OTHR-04. DEVELOPMENT OF A FUNCTIONAL PLATFORM FOR REAL-TIME PERSONALIZED DRUG SENSITIVITY PROFILING OF PATIENT-DERIVED 3D FRESH TUMOR TISSUE CULTURES IN THE PEDIATRIC PRECISION ONCOLOGY PROGRAM INFORM |
title | OTHR-04. DEVELOPMENT OF A FUNCTIONAL PLATFORM FOR REAL-TIME PERSONALIZED DRUG SENSITIVITY PROFILING OF PATIENT-DERIVED 3D FRESH TUMOR TISSUE CULTURES IN THE PEDIATRIC PRECISION ONCOLOGY PROGRAM INFORM |
title_full | OTHR-04. DEVELOPMENT OF A FUNCTIONAL PLATFORM FOR REAL-TIME PERSONALIZED DRUG SENSITIVITY PROFILING OF PATIENT-DERIVED 3D FRESH TUMOR TISSUE CULTURES IN THE PEDIATRIC PRECISION ONCOLOGY PROGRAM INFORM |
title_fullStr | OTHR-04. DEVELOPMENT OF A FUNCTIONAL PLATFORM FOR REAL-TIME PERSONALIZED DRUG SENSITIVITY PROFILING OF PATIENT-DERIVED 3D FRESH TUMOR TISSUE CULTURES IN THE PEDIATRIC PRECISION ONCOLOGY PROGRAM INFORM |
title_full_unstemmed | OTHR-04. DEVELOPMENT OF A FUNCTIONAL PLATFORM FOR REAL-TIME PERSONALIZED DRUG SENSITIVITY PROFILING OF PATIENT-DERIVED 3D FRESH TUMOR TISSUE CULTURES IN THE PEDIATRIC PRECISION ONCOLOGY PROGRAM INFORM |
title_short | OTHR-04. DEVELOPMENT OF A FUNCTIONAL PLATFORM FOR REAL-TIME PERSONALIZED DRUG SENSITIVITY PROFILING OF PATIENT-DERIVED 3D FRESH TUMOR TISSUE CULTURES IN THE PEDIATRIC PRECISION ONCOLOGY PROGRAM INFORM |
title_sort | othr-04. development of a functional platform for real-time personalized drug sensitivity profiling of patient-derived 3d fresh tumor tissue cultures in the pediatric precision oncology program inform |
topic | Final Category: Other (Not Fitting in any Other Category) - OTHR |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10259891/ http://dx.doi.org/10.1093/neuonc/noad073.286 |
work_keys_str_mv | AT peterzielheike othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT jamaladdinnora othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT elharounidina othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT gerloffxeniaf othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT hertersonja othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT fieselpetra othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT berkeryannick othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT blattnerjohnsonmirjam othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT schrammkathrin othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT jonesbarbarac othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT reussdavid othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT turunenlaura othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT friedenaueraileen othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT hollandletztim othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT sillmartin othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT weiserlena othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT previtichristopher othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT balasubramaniangnanaprakash othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT gerbernicolasu othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT gojojohannes othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT huttercaroline othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT øraingrid othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT lohiolli othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT kattamisantonis othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT dewildebram othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT westermannfrank othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT tippeltstephan othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT grafnorbert othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT nathrathmichaela othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT sparbersauermonika othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT sehestedastrid othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT krammchristofm othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT dirksenuta othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT kallioniemiolli othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT pfisterstefanm othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT vantilburgcornelism othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT jonesdavidtw othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT saarelajani othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT pietiainenvilja othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT jagernatalie othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT schlesnermatthias othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT koppschneiderannette othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT oppermannsina othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT mildetill othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT wittolaf othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform AT oehmeina othr04developmentofafunctionalplatformforrealtimepersonalizeddrugsensitivityprofilingofpatientderived3dfreshtumortissueculturesinthepediatricprecisiononcologyprograminform |