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IMG-06. RADIOMIC-BASED RISK STRATIFICATION OF PEDIATRIC LOW-GRADE GLIOMA REVEALS DIFFERENTIALLY EXPRESSED MOLECULAR PROCESSES CONTRIBUTING TO VARIABLE PATIENT PROGNOSIS
In pediatric low-grade gliomas (pLGG), prognosis and responses to treatments are heterogeneous. This heterogeneity may be explained by the differences in molecular composition of the tumors of the same histology and the likely upstream alterations following administered radiation or systemic therapy...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10260013/ http://dx.doi.org/10.1093/neuonc/noad073.183 |
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author | Kazerooni, Anahita Fathi Kim, Meen Chul Kraya, Adam Mahtabfar, Aria Haldar, Debanjan Rathi, Komal Khalili, Nastaran Familiar, Ariana Ware, Jeffrey B Bagheri, Sina Anderson, Hannah Storm, Phillip B Resnick, Adam C Vossough, Arastoo Davatzikos, Christos Nabavizadeh, Ali |
author_facet | Kazerooni, Anahita Fathi Kim, Meen Chul Kraya, Adam Mahtabfar, Aria Haldar, Debanjan Rathi, Komal Khalili, Nastaran Familiar, Ariana Ware, Jeffrey B Bagheri, Sina Anderson, Hannah Storm, Phillip B Resnick, Adam C Vossough, Arastoo Davatzikos, Christos Nabavizadeh, Ali |
author_sort | Kazerooni, Anahita Fathi |
collection | PubMed |
description | In pediatric low-grade gliomas (pLGG), prognosis and responses to treatments are heterogeneous. This heterogeneity may be explained by the differences in molecular composition of the tumors of the same histology and the likely upstream alterations following administered radiation or systemic therapy. Integration of radiomics and clinical variables could generate a non-invasive biomarker that provides upfront prediction about patient’s risk of progression. We show that our proposed radiomic-based risk-stratification signature for pLGGs is associated with alterations in transcriptomic pathways. Standard multiparametric MRI sequences of 134 pLGG patients from Children’s Brain Tumor Network (CBTN) were retrospectively collected and 881 quantitative radiomic features were extracted. A multivariate Cox proportional hazard’s (Cox-PH) regression model was fitted on clinical (age, sex, tumor location, and extent of tumor resection) along with radiomic variables using 5-fold cross-validation, to predict patient’s risk of progression. The Cox-PH model showed excellent performance in prediction of PFS and patient’s risk scores, supported by the concordance index of 0.78. Radiogenomic analysis was performed to determine the transcriptomic pathways (1594 pathways, c2 MsigDb Reactome v2022.1) that contribute to the pLGG risk, predicted by the radiomic signature. ElasticNet regression was applied on the scores obtained by gene set enrichment analysis (GSEA) (in 70/134 subjects) to predict radiomic-based risk scores. Increased risk, corresponded to upregulation of DNA repair pathways, dysregulation of lipophagy, fatty acid beta oxidation, and vitamin D pathways, which are tumor-promoting. BRAFfusion signaling inversely correlated with risk, consistent with known favorable prognosis of KIAA1549-BRAF fused pLGGs. Upregulation in immune related pathways and Toll-Like Receptor (TLR) signaling was associated with lower risk. This study elucidates the synergistic dynamics between the biological processes that promote the risk of progression and radiomic-based risk-stratification signature. The proposed biomarker may be used to encourage targeted therapies in patients with increased predicted risk. |
format | Online Article Text |
id | pubmed-10260013 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102600132023-06-13 IMG-06. RADIOMIC-BASED RISK STRATIFICATION OF PEDIATRIC LOW-GRADE GLIOMA REVEALS DIFFERENTIALLY EXPRESSED MOLECULAR PROCESSES CONTRIBUTING TO VARIABLE PATIENT PROGNOSIS Kazerooni, Anahita Fathi Kim, Meen Chul Kraya, Adam Mahtabfar, Aria Haldar, Debanjan Rathi, Komal Khalili, Nastaran Familiar, Ariana Ware, Jeffrey B Bagheri, Sina Anderson, Hannah Storm, Phillip B Resnick, Adam C Vossough, Arastoo Davatzikos, Christos Nabavizadeh, Ali Neuro Oncol Final Category: Imaging - IMG In pediatric low-grade gliomas (pLGG), prognosis and responses to treatments are heterogeneous. This heterogeneity may be explained by the differences in molecular composition of the tumors of the same histology and the likely upstream alterations following administered radiation or systemic therapy. Integration of radiomics and clinical variables could generate a non-invasive biomarker that provides upfront prediction about patient’s risk of progression. We show that our proposed radiomic-based risk-stratification signature for pLGGs is associated with alterations in transcriptomic pathways. Standard multiparametric MRI sequences of 134 pLGG patients from Children’s Brain Tumor Network (CBTN) were retrospectively collected and 881 quantitative radiomic features were extracted. A multivariate Cox proportional hazard’s (Cox-PH) regression model was fitted on clinical (age, sex, tumor location, and extent of tumor resection) along with radiomic variables using 5-fold cross-validation, to predict patient’s risk of progression. The Cox-PH model showed excellent performance in prediction of PFS and patient’s risk scores, supported by the concordance index of 0.78. Radiogenomic analysis was performed to determine the transcriptomic pathways (1594 pathways, c2 MsigDb Reactome v2022.1) that contribute to the pLGG risk, predicted by the radiomic signature. ElasticNet regression was applied on the scores obtained by gene set enrichment analysis (GSEA) (in 70/134 subjects) to predict radiomic-based risk scores. Increased risk, corresponded to upregulation of DNA repair pathways, dysregulation of lipophagy, fatty acid beta oxidation, and vitamin D pathways, which are tumor-promoting. BRAFfusion signaling inversely correlated with risk, consistent with known favorable prognosis of KIAA1549-BRAF fused pLGGs. Upregulation in immune related pathways and Toll-Like Receptor (TLR) signaling was associated with lower risk. This study elucidates the synergistic dynamics between the biological processes that promote the risk of progression and radiomic-based risk-stratification signature. The proposed biomarker may be used to encourage targeted therapies in patients with increased predicted risk. Oxford University Press 2023-06-12 /pmc/articles/PMC10260013/ http://dx.doi.org/10.1093/neuonc/noad073.183 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of the Society for Neuro-Oncology. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Final Category: Imaging - IMG Kazerooni, Anahita Fathi Kim, Meen Chul Kraya, Adam Mahtabfar, Aria Haldar, Debanjan Rathi, Komal Khalili, Nastaran Familiar, Ariana Ware, Jeffrey B Bagheri, Sina Anderson, Hannah Storm, Phillip B Resnick, Adam C Vossough, Arastoo Davatzikos, Christos Nabavizadeh, Ali IMG-06. RADIOMIC-BASED RISK STRATIFICATION OF PEDIATRIC LOW-GRADE GLIOMA REVEALS DIFFERENTIALLY EXPRESSED MOLECULAR PROCESSES CONTRIBUTING TO VARIABLE PATIENT PROGNOSIS |
title | IMG-06. RADIOMIC-BASED RISK STRATIFICATION OF PEDIATRIC LOW-GRADE GLIOMA REVEALS DIFFERENTIALLY EXPRESSED MOLECULAR PROCESSES CONTRIBUTING TO VARIABLE PATIENT PROGNOSIS |
title_full | IMG-06. RADIOMIC-BASED RISK STRATIFICATION OF PEDIATRIC LOW-GRADE GLIOMA REVEALS DIFFERENTIALLY EXPRESSED MOLECULAR PROCESSES CONTRIBUTING TO VARIABLE PATIENT PROGNOSIS |
title_fullStr | IMG-06. RADIOMIC-BASED RISK STRATIFICATION OF PEDIATRIC LOW-GRADE GLIOMA REVEALS DIFFERENTIALLY EXPRESSED MOLECULAR PROCESSES CONTRIBUTING TO VARIABLE PATIENT PROGNOSIS |
title_full_unstemmed | IMG-06. RADIOMIC-BASED RISK STRATIFICATION OF PEDIATRIC LOW-GRADE GLIOMA REVEALS DIFFERENTIALLY EXPRESSED MOLECULAR PROCESSES CONTRIBUTING TO VARIABLE PATIENT PROGNOSIS |
title_short | IMG-06. RADIOMIC-BASED RISK STRATIFICATION OF PEDIATRIC LOW-GRADE GLIOMA REVEALS DIFFERENTIALLY EXPRESSED MOLECULAR PROCESSES CONTRIBUTING TO VARIABLE PATIENT PROGNOSIS |
title_sort | img-06. radiomic-based risk stratification of pediatric low-grade glioma reveals differentially expressed molecular processes contributing to variable patient prognosis |
topic | Final Category: Imaging - IMG |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10260013/ http://dx.doi.org/10.1093/neuonc/noad073.183 |
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