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Prediction of prostate tumour hypoxia using pre-treatment MRI-derived radiomics: preliminary findings

PURPOSE: To develop a machine learning (ML) model based on radiomic features (RF) extracted from whole prostate gland magnetic resonance imaging (MRI) for prediction of tumour hypoxia pre-radiotherapy. MATERIAL AND METHODS: Consecutive patients with high-grade prostate cancer and pre-treatment MRI t...

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Autores principales: Zhong, Jim, Frood, Russell, McWilliam, Alan, Davey, Angela, Shortall, Jane, Swinton, Martin, Hulson, Oliver, West, Catharine M., Buckley, David, Brown, Sarah, Choudhury, Ananya, Hoskin, Peter, Henry, Ann, Scarsbrook, Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Milan 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10264289/
https://www.ncbi.nlm.nih.gov/pubmed/37198374
http://dx.doi.org/10.1007/s11547-023-01644-3
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author Zhong, Jim
Frood, Russell
McWilliam, Alan
Davey, Angela
Shortall, Jane
Swinton, Martin
Hulson, Oliver
West, Catharine M.
Buckley, David
Brown, Sarah
Choudhury, Ananya
Hoskin, Peter
Henry, Ann
Scarsbrook, Andrew
author_facet Zhong, Jim
Frood, Russell
McWilliam, Alan
Davey, Angela
Shortall, Jane
Swinton, Martin
Hulson, Oliver
West, Catharine M.
Buckley, David
Brown, Sarah
Choudhury, Ananya
Hoskin, Peter
Henry, Ann
Scarsbrook, Andrew
author_sort Zhong, Jim
collection PubMed
description PURPOSE: To develop a machine learning (ML) model based on radiomic features (RF) extracted from whole prostate gland magnetic resonance imaging (MRI) for prediction of tumour hypoxia pre-radiotherapy. MATERIAL AND METHODS: Consecutive patients with high-grade prostate cancer and pre-treatment MRI treated with radiotherapy between 01/12/2007 and 1/08/2013 at two cancer centres were included. Cancers were dichotomised as normoxic or hypoxic using a biopsy-based 32-gene hypoxia signature (Ragnum signature). Prostate segmentation was performed on axial T2-weighted (T2w) sequences using RayStation (v9.1). Histogram standardisation was applied prior to RF extraction. PyRadiomics (v3.0.1) was used to extract RFs for analysis. The cohort was split 80:20 into training and test sets. Six different ML classifiers for distinguishing hypoxia were trained and tuned using five different feature selection models and fivefold cross-validation with 20 repeats. The model with the highest mean validation area under the curve (AUC) receiver operating characteristic (ROC) curve was tested on the unseen set, and AUCs were compared via DeLong test with 95% confidence interval (CI). RESULTS: 195 patients were included with 97 (49.7%) having hypoxic tumours. The hypoxia prediction model with best performance was derived using ridge regression and had a test AUC of 0.69 (95% CI: 0.14). The test AUC for the clinical-only model was lower (0.57), but this was not statistically significant (p = 0.35). The five selected RFs included textural and wavelet-transformed features. CONCLUSION: Whole prostate MRI-radiomics has the potential to non-invasively predict tumour hypoxia prior to radiotherapy which may be helpful for individualised treatment optimisation. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11547-023-01644-3.
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spelling pubmed-102642892023-06-15 Prediction of prostate tumour hypoxia using pre-treatment MRI-derived radiomics: preliminary findings Zhong, Jim Frood, Russell McWilliam, Alan Davey, Angela Shortall, Jane Swinton, Martin Hulson, Oliver West, Catharine M. Buckley, David Brown, Sarah Choudhury, Ananya Hoskin, Peter Henry, Ann Scarsbrook, Andrew Radiol Med Diagnostic Imaging in Oncology PURPOSE: To develop a machine learning (ML) model based on radiomic features (RF) extracted from whole prostate gland magnetic resonance imaging (MRI) for prediction of tumour hypoxia pre-radiotherapy. MATERIAL AND METHODS: Consecutive patients with high-grade prostate cancer and pre-treatment MRI treated with radiotherapy between 01/12/2007 and 1/08/2013 at two cancer centres were included. Cancers were dichotomised as normoxic or hypoxic using a biopsy-based 32-gene hypoxia signature (Ragnum signature). Prostate segmentation was performed on axial T2-weighted (T2w) sequences using RayStation (v9.1). Histogram standardisation was applied prior to RF extraction. PyRadiomics (v3.0.1) was used to extract RFs for analysis. The cohort was split 80:20 into training and test sets. Six different ML classifiers for distinguishing hypoxia were trained and tuned using five different feature selection models and fivefold cross-validation with 20 repeats. The model with the highest mean validation area under the curve (AUC) receiver operating characteristic (ROC) curve was tested on the unseen set, and AUCs were compared via DeLong test with 95% confidence interval (CI). RESULTS: 195 patients were included with 97 (49.7%) having hypoxic tumours. The hypoxia prediction model with best performance was derived using ridge regression and had a test AUC of 0.69 (95% CI: 0.14). The test AUC for the clinical-only model was lower (0.57), but this was not statistically significant (p = 0.35). The five selected RFs included textural and wavelet-transformed features. CONCLUSION: Whole prostate MRI-radiomics has the potential to non-invasively predict tumour hypoxia prior to radiotherapy which may be helpful for individualised treatment optimisation. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11547-023-01644-3. Springer Milan 2023-05-17 2023 /pmc/articles/PMC10264289/ /pubmed/37198374 http://dx.doi.org/10.1007/s11547-023-01644-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Diagnostic Imaging in Oncology
Zhong, Jim
Frood, Russell
McWilliam, Alan
Davey, Angela
Shortall, Jane
Swinton, Martin
Hulson, Oliver
West, Catharine M.
Buckley, David
Brown, Sarah
Choudhury, Ananya
Hoskin, Peter
Henry, Ann
Scarsbrook, Andrew
Prediction of prostate tumour hypoxia using pre-treatment MRI-derived radiomics: preliminary findings
title Prediction of prostate tumour hypoxia using pre-treatment MRI-derived radiomics: preliminary findings
title_full Prediction of prostate tumour hypoxia using pre-treatment MRI-derived radiomics: preliminary findings
title_fullStr Prediction of prostate tumour hypoxia using pre-treatment MRI-derived radiomics: preliminary findings
title_full_unstemmed Prediction of prostate tumour hypoxia using pre-treatment MRI-derived radiomics: preliminary findings
title_short Prediction of prostate tumour hypoxia using pre-treatment MRI-derived radiomics: preliminary findings
title_sort prediction of prostate tumour hypoxia using pre-treatment mri-derived radiomics: preliminary findings
topic Diagnostic Imaging in Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10264289/
https://www.ncbi.nlm.nih.gov/pubmed/37198374
http://dx.doi.org/10.1007/s11547-023-01644-3
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