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A‐to‐I RNA Editing in Klebsiella pneumoniae Regulates Quorum Sensing and Affects Cell Growth and Virulence
Millions of adenosine (A) to inosine (I) RNA editing events are reported and well‐studied in eukaryotes; however, many features and functions remain unclear in prokaryotes. By combining PacBio Sequel, Illumina whole‐genome sequencing, and RNA Sequencing data of two Klebsiella pneumoniae strains with...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10265045/ https://www.ncbi.nlm.nih.gov/pubmed/37083223 http://dx.doi.org/10.1002/advs.202206056 |
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author | Yang, Xin‐Zhuang Sun, Tian‐Shu Jia, Pei‐Yao Li, Sheng‐Jie Li, Xiao‐Gang Shi, Yanan Li, Xue Gao, Haotian Yin, Huabing Jia, Xin‐Miao Yang, Qiwen |
author_facet | Yang, Xin‐Zhuang Sun, Tian‐Shu Jia, Pei‐Yao Li, Sheng‐Jie Li, Xiao‐Gang Shi, Yanan Li, Xue Gao, Haotian Yin, Huabing Jia, Xin‐Miao Yang, Qiwen |
author_sort | Yang, Xin‐Zhuang |
collection | PubMed |
description | Millions of adenosine (A) to inosine (I) RNA editing events are reported and well‐studied in eukaryotes; however, many features and functions remain unclear in prokaryotes. By combining PacBio Sequel, Illumina whole‐genome sequencing, and RNA Sequencing data of two Klebsiella pneumoniae strains with different virulence, a total of 13 RNA editing events are identified. The RNA editing event of badR is focused, which shows a significant difference in editing levels in the two K. pneumoniae strains and is predicted to be a transcription factor. A hard‐coded Cys is mutated on DNA to simulate the effect of complete editing of badR. Transcriptome analysis identifies the cellular quorum sensing (QS) pathway as the most dramatic change, demonstrating the dynamic regulation of RNA editing on badR related to coordinated collective behavior. Indeed, a significant difference in autoinducer 2 activity and cell growth is detected when the cells reach the stationary phase. Additionally, the mutant strain shows significantly lower virulence than the WT strain in the Galleria mellonella infection model. Furthermore, RNA editing regulation of badR is highly conserved across K. pneumoniae strains. Overall, this work provides new insights into posttranscriptional regulation in bacteria. |
format | Online Article Text |
id | pubmed-10265045 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102650452023-06-15 A‐to‐I RNA Editing in Klebsiella pneumoniae Regulates Quorum Sensing and Affects Cell Growth and Virulence Yang, Xin‐Zhuang Sun, Tian‐Shu Jia, Pei‐Yao Li, Sheng‐Jie Li, Xiao‐Gang Shi, Yanan Li, Xue Gao, Haotian Yin, Huabing Jia, Xin‐Miao Yang, Qiwen Adv Sci (Weinh) Research Articles Millions of adenosine (A) to inosine (I) RNA editing events are reported and well‐studied in eukaryotes; however, many features and functions remain unclear in prokaryotes. By combining PacBio Sequel, Illumina whole‐genome sequencing, and RNA Sequencing data of two Klebsiella pneumoniae strains with different virulence, a total of 13 RNA editing events are identified. The RNA editing event of badR is focused, which shows a significant difference in editing levels in the two K. pneumoniae strains and is predicted to be a transcription factor. A hard‐coded Cys is mutated on DNA to simulate the effect of complete editing of badR. Transcriptome analysis identifies the cellular quorum sensing (QS) pathway as the most dramatic change, demonstrating the dynamic regulation of RNA editing on badR related to coordinated collective behavior. Indeed, a significant difference in autoinducer 2 activity and cell growth is detected when the cells reach the stationary phase. Additionally, the mutant strain shows significantly lower virulence than the WT strain in the Galleria mellonella infection model. Furthermore, RNA editing regulation of badR is highly conserved across K. pneumoniae strains. Overall, this work provides new insights into posttranscriptional regulation in bacteria. John Wiley and Sons Inc. 2023-04-21 /pmc/articles/PMC10265045/ /pubmed/37083223 http://dx.doi.org/10.1002/advs.202206056 Text en © 2023 The Authors. Advanced Science published by Wiley‐VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Yang, Xin‐Zhuang Sun, Tian‐Shu Jia, Pei‐Yao Li, Sheng‐Jie Li, Xiao‐Gang Shi, Yanan Li, Xue Gao, Haotian Yin, Huabing Jia, Xin‐Miao Yang, Qiwen A‐to‐I RNA Editing in Klebsiella pneumoniae Regulates Quorum Sensing and Affects Cell Growth and Virulence |
title | A‐to‐I RNA Editing in Klebsiella pneumoniae Regulates Quorum Sensing and Affects Cell Growth and Virulence |
title_full | A‐to‐I RNA Editing in Klebsiella pneumoniae Regulates Quorum Sensing and Affects Cell Growth and Virulence |
title_fullStr | A‐to‐I RNA Editing in Klebsiella pneumoniae Regulates Quorum Sensing and Affects Cell Growth and Virulence |
title_full_unstemmed | A‐to‐I RNA Editing in Klebsiella pneumoniae Regulates Quorum Sensing and Affects Cell Growth and Virulence |
title_short | A‐to‐I RNA Editing in Klebsiella pneumoniae Regulates Quorum Sensing and Affects Cell Growth and Virulence |
title_sort | a‐to‐i rna editing in klebsiella pneumoniae regulates quorum sensing and affects cell growth and virulence |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10265045/ https://www.ncbi.nlm.nih.gov/pubmed/37083223 http://dx.doi.org/10.1002/advs.202206056 |
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