Cargando…

Combined metabolomics and tandem machine-learning models for wound age estimation: a novel analytical strategy

 : Wound age estimation is one of the most challenging and indispensable issues for forensic pathologists. Although many methods based on physical findings and biochemical tests can be used to estimate wound age, an objective and reliable method for inferring the time interval after injury remains d...

Descripción completa

Detalles Bibliográficos
Autores principales: Cao, Jie, An, Guoshuai, Li, Jian, Wang, Liangliang, Ren, Kang, Du, Qiuxiang, Yun, Keming, Wang, Yingyuan, Sun, Junhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10265958/
https://www.ncbi.nlm.nih.gov/pubmed/37415796
http://dx.doi.org/10.1093/fsr/owad007
_version_ 1785058641249828864
author Cao, Jie
An, Guoshuai
Li, Jian
Wang, Liangliang
Ren, Kang
Du, Qiuxiang
Yun, Keming
Wang, Yingyuan
Sun, Junhong
author_facet Cao, Jie
An, Guoshuai
Li, Jian
Wang, Liangliang
Ren, Kang
Du, Qiuxiang
Yun, Keming
Wang, Yingyuan
Sun, Junhong
author_sort Cao, Jie
collection PubMed
description  : Wound age estimation is one of the most challenging and indispensable issues for forensic pathologists. Although many methods based on physical findings and biochemical tests can be used to estimate wound age, an objective and reliable method for inferring the time interval after injury remains difficult. In the present study, endogenous metabolites of contused skeletal muscle were investigated to estimate the time interval after injury. Animal model of skeletal muscle injury was established using Sprague–Dawley rat, and the contused muscles were sampled at 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44, and 48 h postcontusion (n = 9). Then, the samples were analysed using ultraperformance liquid chromatography coupled with high-resolution mass spectrometry. A total of 43 differential metabolites in contused muscle were determined by metabolomics method. They were applied to construct a two-level tandem prediction model for wound age estimation based on multilayer perceptron algorithm. As a result, all muscle samples were eventually divided into the following subgroups: 4, 8, 12, 16–20, 24–32, 36–40, and 44–48 h. The tandem model exhibited a robust performance and achieved a prediction accuracy of 92.6%, which was much higher than that of the single model. In summary, the multilayer perceptron–multilayer perceptron tandem machine-learning model based on metabolomics data can be used as a novel strategy for wound age estimation in future forensic casework. KEY POINTS: The changes of metabolite profile were correlated with the time interval after injury in contused skeletal muscle. A panel of 43 endogenous metabolites screened by ultraperformance liquid chromatography coupled with high-resolution mass spectrometry could distinguish the wound ages. The multilayer perceptron (MLP) algorithm exhibited a robust performance in wound age estimation using metabolites. The combination of matabolomics and MLP–MLP tandem model could improve the accuracy of inferring the time interval after injury.
format Online
Article
Text
id pubmed-10265958
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-102659582023-07-06 Combined metabolomics and tandem machine-learning models for wound age estimation: a novel analytical strategy Cao, Jie An, Guoshuai Li, Jian Wang, Liangliang Ren, Kang Du, Qiuxiang Yun, Keming Wang, Yingyuan Sun, Junhong Forensic Sci Res Research Article  : Wound age estimation is one of the most challenging and indispensable issues for forensic pathologists. Although many methods based on physical findings and biochemical tests can be used to estimate wound age, an objective and reliable method for inferring the time interval after injury remains difficult. In the present study, endogenous metabolites of contused skeletal muscle were investigated to estimate the time interval after injury. Animal model of skeletal muscle injury was established using Sprague–Dawley rat, and the contused muscles were sampled at 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44, and 48 h postcontusion (n = 9). Then, the samples were analysed using ultraperformance liquid chromatography coupled with high-resolution mass spectrometry. A total of 43 differential metabolites in contused muscle were determined by metabolomics method. They were applied to construct a two-level tandem prediction model for wound age estimation based on multilayer perceptron algorithm. As a result, all muscle samples were eventually divided into the following subgroups: 4, 8, 12, 16–20, 24–32, 36–40, and 44–48 h. The tandem model exhibited a robust performance and achieved a prediction accuracy of 92.6%, which was much higher than that of the single model. In summary, the multilayer perceptron–multilayer perceptron tandem machine-learning model based on metabolomics data can be used as a novel strategy for wound age estimation in future forensic casework. KEY POINTS: The changes of metabolite profile were correlated with the time interval after injury in contused skeletal muscle. A panel of 43 endogenous metabolites screened by ultraperformance liquid chromatography coupled with high-resolution mass spectrometry could distinguish the wound ages. The multilayer perceptron (MLP) algorithm exhibited a robust performance in wound age estimation using metabolites. The combination of matabolomics and MLP–MLP tandem model could improve the accuracy of inferring the time interval after injury. Oxford University Press 2023-04-25 /pmc/articles/PMC10265958/ /pubmed/37415796 http://dx.doi.org/10.1093/fsr/owad007 Text en © The Author(s) 2023. Published by OUP on behalf of the Academy of Forensic Science. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Cao, Jie
An, Guoshuai
Li, Jian
Wang, Liangliang
Ren, Kang
Du, Qiuxiang
Yun, Keming
Wang, Yingyuan
Sun, Junhong
Combined metabolomics and tandem machine-learning models for wound age estimation: a novel analytical strategy
title Combined metabolomics and tandem machine-learning models for wound age estimation: a novel analytical strategy
title_full Combined metabolomics and tandem machine-learning models for wound age estimation: a novel analytical strategy
title_fullStr Combined metabolomics and tandem machine-learning models for wound age estimation: a novel analytical strategy
title_full_unstemmed Combined metabolomics and tandem machine-learning models for wound age estimation: a novel analytical strategy
title_short Combined metabolomics and tandem machine-learning models for wound age estimation: a novel analytical strategy
title_sort combined metabolomics and tandem machine-learning models for wound age estimation: a novel analytical strategy
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10265958/
https://www.ncbi.nlm.nih.gov/pubmed/37415796
http://dx.doi.org/10.1093/fsr/owad007
work_keys_str_mv AT caojie combinedmetabolomicsandtandemmachinelearningmodelsforwoundageestimationanovelanalyticalstrategy
AT anguoshuai combinedmetabolomicsandtandemmachinelearningmodelsforwoundageestimationanovelanalyticalstrategy
AT lijian combinedmetabolomicsandtandemmachinelearningmodelsforwoundageestimationanovelanalyticalstrategy
AT wangliangliang combinedmetabolomicsandtandemmachinelearningmodelsforwoundageestimationanovelanalyticalstrategy
AT renkang combinedmetabolomicsandtandemmachinelearningmodelsforwoundageestimationanovelanalyticalstrategy
AT duqiuxiang combinedmetabolomicsandtandemmachinelearningmodelsforwoundageestimationanovelanalyticalstrategy
AT yunkeming combinedmetabolomicsandtandemmachinelearningmodelsforwoundageestimationanovelanalyticalstrategy
AT wangyingyuan combinedmetabolomicsandtandemmachinelearningmodelsforwoundageestimationanovelanalyticalstrategy
AT sunjunhong combinedmetabolomicsandtandemmachinelearningmodelsforwoundageestimationanovelanalyticalstrategy