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Reducing overprediction of molecular crystal structures via threshold clustering
Crystal structure prediction is becoming an increasingly valuable tool for assessing polymorphism of crystalline molecular compounds, yet invariably, it overpredicts the number of polymorphs. One of the causes for this overprediction is in neglecting the coalescence of potential energy minima, separ...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10266058/ https://www.ncbi.nlm.nih.gov/pubmed/37252993 http://dx.doi.org/10.1073/pnas.2300516120 |
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author | Butler, Patrick W. V. Day, Graeme M. |
author_facet | Butler, Patrick W. V. Day, Graeme M. |
author_sort | Butler, Patrick W. V. |
collection | PubMed |
description | Crystal structure prediction is becoming an increasingly valuable tool for assessing polymorphism of crystalline molecular compounds, yet invariably, it overpredicts the number of polymorphs. One of the causes for this overprediction is in neglecting the coalescence of potential energy minima, separated by relatively small energy barriers, into a single basin at finite temperature. Considering this, we demonstrate a method underpinned by the threshold algorithm for clustering potential energy minima into basins, thereby identifying kinetically stable polymorphs and reducing overprediction. |
format | Online Article Text |
id | pubmed-10266058 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-102660582023-11-30 Reducing overprediction of molecular crystal structures via threshold clustering Butler, Patrick W. V. Day, Graeme M. Proc Natl Acad Sci U S A Physical Sciences Crystal structure prediction is becoming an increasingly valuable tool for assessing polymorphism of crystalline molecular compounds, yet invariably, it overpredicts the number of polymorphs. One of the causes for this overprediction is in neglecting the coalescence of potential energy minima, separated by relatively small energy barriers, into a single basin at finite temperature. Considering this, we demonstrate a method underpinned by the threshold algorithm for clustering potential energy minima into basins, thereby identifying kinetically stable polymorphs and reducing overprediction. National Academy of Sciences 2023-05-30 2023-06-06 /pmc/articles/PMC10266058/ /pubmed/37252993 http://dx.doi.org/10.1073/pnas.2300516120 Text en Copyright © 2023 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Physical Sciences Butler, Patrick W. V. Day, Graeme M. Reducing overprediction of molecular crystal structures via threshold clustering |
title | Reducing overprediction of molecular crystal structures via threshold clustering |
title_full | Reducing overprediction of molecular crystal structures via threshold clustering |
title_fullStr | Reducing overprediction of molecular crystal structures via threshold clustering |
title_full_unstemmed | Reducing overprediction of molecular crystal structures via threshold clustering |
title_short | Reducing overprediction of molecular crystal structures via threshold clustering |
title_sort | reducing overprediction of molecular crystal structures via threshold clustering |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10266058/ https://www.ncbi.nlm.nih.gov/pubmed/37252993 http://dx.doi.org/10.1073/pnas.2300516120 |
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