The first chloroplast sequence of Rosa davurica Pall. var. Davurica

Rosa davurica Pall. var. davurica is a member of the plant family Rosaceae. Although R. davurica has high application value, its chloroplast genome sequence has not been reported. This study aims to reveal the genetic characteristics of the chloroplast genome of Rosa roxburghii. The length of its to...

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Detalles Bibliográficos
Autores principales: Xia, Yongxiu, Wu, Hua, Li, Shaofeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Plastome Reports
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10266123/
https://www.ncbi.nlm.nih.gov/pubmed/37325773
http://dx.doi.org/10.1080/23802359.2023.2220431
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author Xia, Yongxiu
Wu, Hua
Li, Shaofeng
author_facet Xia, Yongxiu
Wu, Hua
Li, Shaofeng
author_sort Xia, Yongxiu
collection PubMed
description Rosa davurica Pall. var. davurica is a member of the plant family Rosaceae. Although R. davurica has high application value, its chloroplast genome sequence has not been reported. This study aims to reveal the genetic characteristics of the chloroplast genome of Rosa roxburghii. The length of its total chloroplast DNA is 156,971 bp, with 37.22% G/C content. Its chloroplast genome has two inverted repeat (IRa and IRb) regions totaling 26,051 bp which are separated by a large single copy (LSC) region of 86,032 bp and a small single copy (SSC) region of 18,837 bp. The genome contains 131 independent genes (86 protein-coding, 37 tRNA, and 8 rRNA), and there are 18 repeated genes within the IR region. Among these genes, 17 genes contained one or two introns. The phylogenetic analysis showed that R. davurica was relatively close to other Rosa species, such as the Rosa hybrid.
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spelling pubmed-102661232023-06-15 The first chloroplast sequence of Rosa davurica Pall. var. Davurica Xia, Yongxiu Wu, Hua Li, Shaofeng Mitochondrial DNA B Resour Plastome Reports Rosa davurica Pall. var. davurica is a member of the plant family Rosaceae. Although R. davurica has high application value, its chloroplast genome sequence has not been reported. This study aims to reveal the genetic characteristics of the chloroplast genome of Rosa roxburghii. The length of its total chloroplast DNA is 156,971 bp, with 37.22% G/C content. Its chloroplast genome has two inverted repeat (IRa and IRb) regions totaling 26,051 bp which are separated by a large single copy (LSC) region of 86,032 bp and a small single copy (SSC) region of 18,837 bp. The genome contains 131 independent genes (86 protein-coding, 37 tRNA, and 8 rRNA), and there are 18 repeated genes within the IR region. Among these genes, 17 genes contained one or two introns. The phylogenetic analysis showed that R. davurica was relatively close to other Rosa species, such as the Rosa hybrid. Taylor & Francis 2023-06-13 /pmc/articles/PMC10266123/ /pubmed/37325773 http://dx.doi.org/10.1080/23802359.2023.2220431 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Plastome Reports
Xia, Yongxiu
Wu, Hua
Li, Shaofeng
The first chloroplast sequence of Rosa davurica Pall. var. Davurica
title The first chloroplast sequence of Rosa davurica Pall. var. Davurica
title_full The first chloroplast sequence of Rosa davurica Pall. var. Davurica
title_fullStr The first chloroplast sequence of Rosa davurica Pall. var. Davurica
title_full_unstemmed The first chloroplast sequence of Rosa davurica Pall. var. Davurica
title_short The first chloroplast sequence of Rosa davurica Pall. var. Davurica
title_sort first chloroplast sequence of rosa davurica pall. var. davurica
topic Plastome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10266123/
https://www.ncbi.nlm.nih.gov/pubmed/37325773
http://dx.doi.org/10.1080/23802359.2023.2220431
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