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A draft genome assembly of reef-building octocoral Heliopora coerulea

Coral reefs are under existential threat from climate change and anthropogenic impacts. Genomic studies have enhanced our knowledge of resilience and responses of some coral species to environmental stress, but reference genomes are lacking for many coral species. The blue coral Heliopora is the onl...

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Autores principales: Ip, Jack Chi-Ho, Ho, Ming-Hay, Chan, Benny K. K., Qiu, Jian-Wen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267220/
https://www.ncbi.nlm.nih.gov/pubmed/37316548
http://dx.doi.org/10.1038/s41597-023-02291-z
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author Ip, Jack Chi-Ho
Ho, Ming-Hay
Chan, Benny K. K.
Qiu, Jian-Wen
author_facet Ip, Jack Chi-Ho
Ho, Ming-Hay
Chan, Benny K. K.
Qiu, Jian-Wen
author_sort Ip, Jack Chi-Ho
collection PubMed
description Coral reefs are under existential threat from climate change and anthropogenic impacts. Genomic studies have enhanced our knowledge of resilience and responses of some coral species to environmental stress, but reference genomes are lacking for many coral species. The blue coral Heliopora is the only reef-building octocoral genus and exhibits optimal growth at a temperature close to the bleaching threshold of scleractinian corals. Local and high-latitude expansions of Heliopora coerulea were reported in the last decade, but little is known about the molecular mechanisms underlying its thermal resistance. We generated a draft genome of H. coerulea with an assembled size of 429.9 Mb, scaffold N50 of 1.42 Mb and BUSCO completeness of 94.9%. The genome contains 239.1 Mb repetitive sequences, 27,108 protein coding genes, 6,225 lncRNAs, and 79 miRNAs. This reference genome provides a valuable resource for in-depth studies on the adaptive mechanisms of corals under climate change and the evolution of skeleton in cnidarian.
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spelling pubmed-102672202023-06-15 A draft genome assembly of reef-building octocoral Heliopora coerulea Ip, Jack Chi-Ho Ho, Ming-Hay Chan, Benny K. K. Qiu, Jian-Wen Sci Data Data Descriptor Coral reefs are under existential threat from climate change and anthropogenic impacts. Genomic studies have enhanced our knowledge of resilience and responses of some coral species to environmental stress, but reference genomes are lacking for many coral species. The blue coral Heliopora is the only reef-building octocoral genus and exhibits optimal growth at a temperature close to the bleaching threshold of scleractinian corals. Local and high-latitude expansions of Heliopora coerulea were reported in the last decade, but little is known about the molecular mechanisms underlying its thermal resistance. We generated a draft genome of H. coerulea with an assembled size of 429.9 Mb, scaffold N50 of 1.42 Mb and BUSCO completeness of 94.9%. The genome contains 239.1 Mb repetitive sequences, 27,108 protein coding genes, 6,225 lncRNAs, and 79 miRNAs. This reference genome provides a valuable resource for in-depth studies on the adaptive mechanisms of corals under climate change and the evolution of skeleton in cnidarian. Nature Publishing Group UK 2023-06-14 /pmc/articles/PMC10267220/ /pubmed/37316548 http://dx.doi.org/10.1038/s41597-023-02291-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Ip, Jack Chi-Ho
Ho, Ming-Hay
Chan, Benny K. K.
Qiu, Jian-Wen
A draft genome assembly of reef-building octocoral Heliopora coerulea
title A draft genome assembly of reef-building octocoral Heliopora coerulea
title_full A draft genome assembly of reef-building octocoral Heliopora coerulea
title_fullStr A draft genome assembly of reef-building octocoral Heliopora coerulea
title_full_unstemmed A draft genome assembly of reef-building octocoral Heliopora coerulea
title_short A draft genome assembly of reef-building octocoral Heliopora coerulea
title_sort draft genome assembly of reef-building octocoral heliopora coerulea
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267220/
https://www.ncbi.nlm.nih.gov/pubmed/37316548
http://dx.doi.org/10.1038/s41597-023-02291-z
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