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A draft genome assembly of reef-building octocoral Heliopora coerulea
Coral reefs are under existential threat from climate change and anthropogenic impacts. Genomic studies have enhanced our knowledge of resilience and responses of some coral species to environmental stress, but reference genomes are lacking for many coral species. The blue coral Heliopora is the onl...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267220/ https://www.ncbi.nlm.nih.gov/pubmed/37316548 http://dx.doi.org/10.1038/s41597-023-02291-z |
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author | Ip, Jack Chi-Ho Ho, Ming-Hay Chan, Benny K. K. Qiu, Jian-Wen |
author_facet | Ip, Jack Chi-Ho Ho, Ming-Hay Chan, Benny K. K. Qiu, Jian-Wen |
author_sort | Ip, Jack Chi-Ho |
collection | PubMed |
description | Coral reefs are under existential threat from climate change and anthropogenic impacts. Genomic studies have enhanced our knowledge of resilience and responses of some coral species to environmental stress, but reference genomes are lacking for many coral species. The blue coral Heliopora is the only reef-building octocoral genus and exhibits optimal growth at a temperature close to the bleaching threshold of scleractinian corals. Local and high-latitude expansions of Heliopora coerulea were reported in the last decade, but little is known about the molecular mechanisms underlying its thermal resistance. We generated a draft genome of H. coerulea with an assembled size of 429.9 Mb, scaffold N50 of 1.42 Mb and BUSCO completeness of 94.9%. The genome contains 239.1 Mb repetitive sequences, 27,108 protein coding genes, 6,225 lncRNAs, and 79 miRNAs. This reference genome provides a valuable resource for in-depth studies on the adaptive mechanisms of corals under climate change and the evolution of skeleton in cnidarian. |
format | Online Article Text |
id | pubmed-10267220 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-102672202023-06-15 A draft genome assembly of reef-building octocoral Heliopora coerulea Ip, Jack Chi-Ho Ho, Ming-Hay Chan, Benny K. K. Qiu, Jian-Wen Sci Data Data Descriptor Coral reefs are under existential threat from climate change and anthropogenic impacts. Genomic studies have enhanced our knowledge of resilience and responses of some coral species to environmental stress, but reference genomes are lacking for many coral species. The blue coral Heliopora is the only reef-building octocoral genus and exhibits optimal growth at a temperature close to the bleaching threshold of scleractinian corals. Local and high-latitude expansions of Heliopora coerulea were reported in the last decade, but little is known about the molecular mechanisms underlying its thermal resistance. We generated a draft genome of H. coerulea with an assembled size of 429.9 Mb, scaffold N50 of 1.42 Mb and BUSCO completeness of 94.9%. The genome contains 239.1 Mb repetitive sequences, 27,108 protein coding genes, 6,225 lncRNAs, and 79 miRNAs. This reference genome provides a valuable resource for in-depth studies on the adaptive mechanisms of corals under climate change and the evolution of skeleton in cnidarian. Nature Publishing Group UK 2023-06-14 /pmc/articles/PMC10267220/ /pubmed/37316548 http://dx.doi.org/10.1038/s41597-023-02291-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Ip, Jack Chi-Ho Ho, Ming-Hay Chan, Benny K. K. Qiu, Jian-Wen A draft genome assembly of reef-building octocoral Heliopora coerulea |
title | A draft genome assembly of reef-building octocoral Heliopora coerulea |
title_full | A draft genome assembly of reef-building octocoral Heliopora coerulea |
title_fullStr | A draft genome assembly of reef-building octocoral Heliopora coerulea |
title_full_unstemmed | A draft genome assembly of reef-building octocoral Heliopora coerulea |
title_short | A draft genome assembly of reef-building octocoral Heliopora coerulea |
title_sort | draft genome assembly of reef-building octocoral heliopora coerulea |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267220/ https://www.ncbi.nlm.nih.gov/pubmed/37316548 http://dx.doi.org/10.1038/s41597-023-02291-z |
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