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Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model
As the COVID-19 pandemic has progressed, various models have been developed to forecast changes in the outbreak and assess intervention strategies. In this study we validate the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model against an ensemble of proxy-ground truth infec...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Ltd.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267499/ https://www.ncbi.nlm.nih.gov/pubmed/37352616 http://dx.doi.org/10.1016/j.healthplace.2023.103065 |
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author | Woodul, Rachel L. Delamater, Paul L. Woodburn, Meg |
author_facet | Woodul, Rachel L. Delamater, Paul L. Woodburn, Meg |
author_sort | Woodul, Rachel L. |
collection | PubMed |
description | As the COVID-19 pandemic has progressed, various models have been developed to forecast changes in the outbreak and assess intervention strategies. In this study we validate the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model against an ensemble of proxy-ground truth infections datasets. We assess the performance of SIDD-NC using Spearman Rank Correlation, RMSE, and percent RMSE at a state and county level. We conduct the analysis for the period of March 2020 through November 2020 as well as in shorter time increments to assess both the recreation of the pandemic curve as well as day-to-day transmission of SARS-CoV-2 within the population. We find that SIDD-NC performs well against the datasets in the ensemble, generating an estimate of infections that is robust both spatially and temporally. |
format | Online Article Text |
id | pubmed-10267499 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102674992023-06-15 Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model Woodul, Rachel L. Delamater, Paul L. Woodburn, Meg Health Place Article As the COVID-19 pandemic has progressed, various models have been developed to forecast changes in the outbreak and assess intervention strategies. In this study we validate the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model against an ensemble of proxy-ground truth infections datasets. We assess the performance of SIDD-NC using Spearman Rank Correlation, RMSE, and percent RMSE at a state and county level. We conduct the analysis for the period of March 2020 through November 2020 as well as in shorter time increments to assess both the recreation of the pandemic curve as well as day-to-day transmission of SARS-CoV-2 within the population. We find that SIDD-NC performs well against the datasets in the ensemble, generating an estimate of infections that is robust both spatially and temporally. Elsevier Ltd. 2023-09 2023-06-15 /pmc/articles/PMC10267499/ /pubmed/37352616 http://dx.doi.org/10.1016/j.healthplace.2023.103065 Text en © 2023 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Woodul, Rachel L. Delamater, Paul L. Woodburn, Meg Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model |
title | Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model |
title_full | Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model |
title_fullStr | Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model |
title_full_unstemmed | Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model |
title_short | Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model |
title_sort | validating model output in the absence of ground truth data: a covid-19 case study using the simulator of infectious disease dynamics in north carolina (sidd-nc) model |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267499/ https://www.ncbi.nlm.nih.gov/pubmed/37352616 http://dx.doi.org/10.1016/j.healthplace.2023.103065 |
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