Cargando…

Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model

As the COVID-19 pandemic has progressed, various models have been developed to forecast changes in the outbreak and assess intervention strategies. In this study we validate the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model against an ensemble of proxy-ground truth infec...

Descripción completa

Detalles Bibliográficos
Autores principales: Woodul, Rachel L., Delamater, Paul L., Woodburn, Meg
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267499/
https://www.ncbi.nlm.nih.gov/pubmed/37352616
http://dx.doi.org/10.1016/j.healthplace.2023.103065
_version_ 1785058941566189568
author Woodul, Rachel L.
Delamater, Paul L.
Woodburn, Meg
author_facet Woodul, Rachel L.
Delamater, Paul L.
Woodburn, Meg
author_sort Woodul, Rachel L.
collection PubMed
description As the COVID-19 pandemic has progressed, various models have been developed to forecast changes in the outbreak and assess intervention strategies. In this study we validate the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model against an ensemble of proxy-ground truth infections datasets. We assess the performance of SIDD-NC using Spearman Rank Correlation, RMSE, and percent RMSE at a state and county level. We conduct the analysis for the period of March 2020 through November 2020 as well as in shorter time increments to assess both the recreation of the pandemic curve as well as day-to-day transmission of SARS-CoV-2 within the population. We find that SIDD-NC performs well against the datasets in the ensemble, generating an estimate of infections that is robust both spatially and temporally.
format Online
Article
Text
id pubmed-10267499
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Elsevier Ltd.
record_format MEDLINE/PubMed
spelling pubmed-102674992023-06-15 Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model Woodul, Rachel L. Delamater, Paul L. Woodburn, Meg Health Place Article As the COVID-19 pandemic has progressed, various models have been developed to forecast changes in the outbreak and assess intervention strategies. In this study we validate the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model against an ensemble of proxy-ground truth infections datasets. We assess the performance of SIDD-NC using Spearman Rank Correlation, RMSE, and percent RMSE at a state and county level. We conduct the analysis for the period of March 2020 through November 2020 as well as in shorter time increments to assess both the recreation of the pandemic curve as well as day-to-day transmission of SARS-CoV-2 within the population. We find that SIDD-NC performs well against the datasets in the ensemble, generating an estimate of infections that is robust both spatially and temporally. Elsevier Ltd. 2023-09 2023-06-15 /pmc/articles/PMC10267499/ /pubmed/37352616 http://dx.doi.org/10.1016/j.healthplace.2023.103065 Text en © 2023 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Woodul, Rachel L.
Delamater, Paul L.
Woodburn, Meg
Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model
title Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model
title_full Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model
title_fullStr Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model
title_full_unstemmed Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model
title_short Validating model output in the absence of ground truth data: A COVID-19 case study using the Simulator of Infectious Disease Dynamics in North Carolina (SIDD-NC) model
title_sort validating model output in the absence of ground truth data: a covid-19 case study using the simulator of infectious disease dynamics in north carolina (sidd-nc) model
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267499/
https://www.ncbi.nlm.nih.gov/pubmed/37352616
http://dx.doi.org/10.1016/j.healthplace.2023.103065
work_keys_str_mv AT woodulrachell validatingmodeloutputintheabsenceofgroundtruthdataacovid19casestudyusingthesimulatorofinfectiousdiseasedynamicsinnorthcarolinasiddncmodel
AT delamaterpaull validatingmodeloutputintheabsenceofgroundtruthdataacovid19casestudyusingthesimulatorofinfectiousdiseasedynamicsinnorthcarolinasiddncmodel
AT woodburnmeg validatingmodeloutputintheabsenceofgroundtruthdataacovid19casestudyusingthesimulatorofinfectiousdiseasedynamicsinnorthcarolinasiddncmodel