Cargando…

Classification of group A rotavirus VP7 and VP4 genotypes using random forest

Introduction: Group A rotaviruses are major pathogens in causing severe diarrhea in young children and neonates of many different species of animals worldwide and group A rotavirus sequence data are becoming increasingly available over time. Different methods exist that allow for rotavirus genotypin...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tran, Hoc, Friendship, Robert, Poljak, Zvonimir
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2023
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267748/ https://www.ncbi.nlm.nih.gov/pubmed/37323680 http://dx.doi.org/10.3389/fgene.2023.1029185

Ejemplares similares

Leveraging a Validated in silico Approach to Elucidate Genotype-Specific VP7 Epitopes and Antigenic Relationships of Porcine Rotavirus A
por: Shepherd, Frances K., et al.
Publicado: (2020)

Human rotavirus VP4 and VP7 genetic diversity and detection of GII norovirus in Ibadan as Nigeria introduces rotavirus vaccine
por: Maina, Meshach Maunta, et al.
Publicado: (2022)

Vaccinomics Approach for Multi-Epitope Vaccine Design against Group A Rotavirus Using VP4 and VP7 Proteins
por: Usman, Muhammad, et al.
Publicado: (2023)

Codon usage of host-specific P genotypes (VP4) in group A rotavirus
por: Wu, Han, et al.
Publicado: (2022)

Strain-Specific Interactions between the Viral Capsid Proteins VP4, VP7 and VP6 Influence Rescue of Rotavirus Reassortants by Reverse Genetics
por: Valusenko-Mehrkens, Roman, et al.
Publicado: (2023)

Bivalent rotavirus VP4∗ stimulates protective antibodies against common genotypes of human rotaviruses
por: Luo, Guoxing, et al.
Publicado: (2022)

An in-vitro transcription assay for development of Rotavirus VP7
por: Jalilian, Shahram, et al.
Publicado: (2017)

Dominance of Emerging G9 and G12 Genotypes and Polymorphism of VP7 and VP4 of Rotaviruses from Bhutanese Children with Severe Diarrhea Prior to the Introduction of Vaccine
por: Wangchuk, Sonam, et al.
Publicado: (2014)

The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca(2+)
por: De Sautu, Marilina, et al.
Publicado: (2023)

Typing of human rotaviruses: Nucleotide mismatches between the VP7 gene and primer are associated with genotyping failure
por: Rahman, Mustafizur, et al.
Publicado: (2005)

Rotavirus A strains obtained from children with acute gastroenteritis in Mozambique, 2012-2013: G and P genotypes and phylogenetic analysis of VP7 and partial VP4 genes
por: João, Eva Dora, et al.
Publicado: (2017)

First detection of bovine group B rotavirus in Japan and sequence of its VP7 gene
por: Tsunemitsu, H., et al.
Publicado: (2014)

Generation of Simian Rotavirus Reassortants with VP4- and VP7-Encoding Genome Segments from Human Strains Circulating in Africa Using Reverse Genetics
por: Falkenhagen, Alexander, et al.
Publicado: (2020)

Recombinant porcine rotavirus VP4 and VP4-LTB expressed in Lactobacillus casei induced mucosal and systemic antibody responses in mice
por: Qiao, Xinyuan, et al.
Publicado: (2009)

Genetic Characterizations and Molecular Evolution of VP7 Gene in Human Group A Rotavirus G1
por: Zhou, Nan, et al.
Publicado: (2020)

Processing of rotavirus glycoprotein VP7: implications for the retention of the protein in the endoplasmic reticulum
Publicado: (1987)

Primary sequence domains required for the retention of rotavirus VP7 in the endoplasmic reticulum
Publicado: (1988)

FIRST MOLECULAR DETECTION AND VP7 (G) GENOTYPING OF GROUP A ROTAVIRUS BY SEMI-NESTED RT-PCR FROM SEWAGE IN NIGERIA
por: MOTAYO, Babatunde Olanrewaju, et al.
Publicado: (2016)

Intracellular neutralisation of rotavirus by VP6-specific IgG
por: Caddy, Sarah L., et al.
Publicado: (2020)

Infectious pancreatic necrosis virus proteins VP2, VP3, VP4 and VP5 antagonize IFNa1 promoter activation while VP1 induces IFNa1
por: Lauksund, Silje, et al.
Publicado: (2015)

Phylogenetic analysis of the viral proteins VP4/VP7 of circulating human rotavirus strains in China from 2016 to 2019 and comparison of their antigenic epitopes with those of vaccine strains
por: Mao, Tongyao, et al.
Publicado: (2022)

Avibirnavirus VP4 Protein Is a Phosphoprotein and Partially Contributes to the Cleavage of Intermediate Precursor VP4-VP3 Polyprotein
por: Wang, Sanying, et al.
Publicado: (2015)

Sero-epidemiological study of the rotavirus VP8* protein from different P genotypes in Valencia, Spain
por: Vila-Vicent, Susana, et al.
Publicado: (2020)

Development of Monoclonal Antibody to Specifically Recognize VP0 but Not VP4 and VP2 of Foot-and-Mouth Disease Virus
por: Park, Sun Young, et al.
Publicado: (2022)

Production of immunogenic VP6 protein of bovine group A rotavirus in transgenic potato plants
por: Matsumura, T., et al.
Publicado: (2014)

Molecular determinants of rotavirus virulence: Localization of a potential virulence site in a murine rotavirus VP4
por: Ijaz, M.K., et al.
Publicado: (1994)

Sequences in rotavirus glycoprotein VP7 that mediate delayed translocation and retention of the protein in the endoplasmic reticulum
Publicado: (1990)

Detection of avian-like rotavirus A VP4 from a calf in Japan
por: MITAKE, Hiromichi, et al.
Publicado: (2014)

Rotavirus Spike Protein VP4 Mediates Viroplasm Assembly by Association to Actin Filaments
por: Vetter, Janine, et al.
Publicado: (2022)

A Natural Vibrio parahaemolyticus ΔpirA(Vp) pirB(Vp+) Mutant Kills Shrimp but Produces neither Pir(Vp) Toxins nor Acute Hepatopancreatic Necrosis Disease Lesions
por: Phiwsaiya, Kornsunee, et al.
Publicado: (2017)

The Functional Characterization of Bat and Human P[3] Rotavirus VP8*s
por: Li, Dandi, et al.
Publicado: (2021)

Molecular Characterization of Outer Capsid Proteins VP5 and VP7 of Grass Carp Reovirus
por: Zhang, Fuxian, et al.
Publicado: (2022)

Molecular evolution of the VP1, VP2, and VP3 genes in human rhinovirus species C
por: Kuroda, Makoto, et al.
Publicado: (2015)

In Silico Study of Rotavirus VP7 Surface Accessible Conserved Regions for Antiviral Drug/Vaccine Design
por: Ghosh, Ambarnil, et al.
Publicado: (2012)

Identification and In Silico Characterization of a Genetically Distinct Avian Rotavirus D Capsid Gene, VP7
por: Deol, Pallavi, et al.
Publicado: (2018)

Detection of mutations in the VP7 gene of vaccine-derived strains shed by monovalent rotavirus vaccine recipients
por: Kaneko, Mei, et al.
Publicado: (2019)

Antigenicity and Immunogenicity of Rotavirus VP6 Protein Expressed on the Surface of Lactococcus lactis
por: Esteban, L. E., et al.
Publicado: (2013)

Anti-VP6 VHH: An Experimental Treatment for Rotavirus A-Associated Disease
por: Maffey, Lucía, et al.
Publicado: (2016)

Silencing the alarms: Innate immune antagonism by rotavirus NSP1 and VP3
por: Morelli, Marco, et al.
Publicado: (2015)

Glycan binding patterns of human rotavirus P[10] VP8* protein
por: Pang, Li-li, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_34pak6ompqadk8mec8gpfgh90t