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Building awareness and capacity of bioinformatics and open science skills in Kenya: a sensitize, train, hack, and collaborate model

We have applied the sensitize-train-hack-community model to build awareness of and capacity in bioinformatics in Kenya. Open science is the practice of science openly and collaboratively, with tools, techniques, and data freely shared to facilitate reuse and collaboration. Open science is not a mand...

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Autores principales: Karega, Pauline, Mwaura, David K., Mwangi, Kennedy W., Wanjiku, Margaret, Landi, Michael, Kibet, Caleb K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267827/
https://www.ncbi.nlm.nih.gov/pubmed/37324282
http://dx.doi.org/10.3389/frma.2023.1070390
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author Karega, Pauline
Mwaura, David K.
Mwangi, Kennedy W.
Wanjiku, Margaret
Landi, Michael
Kibet, Caleb K.
author_facet Karega, Pauline
Mwaura, David K.
Mwangi, Kennedy W.
Wanjiku, Margaret
Landi, Michael
Kibet, Caleb K.
author_sort Karega, Pauline
collection PubMed
description We have applied the sensitize-train-hack-community model to build awareness of and capacity in bioinformatics in Kenya. Open science is the practice of science openly and collaboratively, with tools, techniques, and data freely shared to facilitate reuse and collaboration. Open science is not a mandatory curriculum course in schools, whereas bioinformatics is relatively new in some African regions. Open science tools can significantly enhance bioinformatics, leading to increased reproducibility. However, open science and bioinformatics skills, especially blended, are still lacking among students and researchers in resource-constrained regions. We note the need to be aware of the power of open science among the bioinformatics community and a clear strategy to learn bioinformatics and open science skills for use in research. Using the OpenScienceKE framework—Sensitize, Train, Hack, Collaborate/Community—the BOSS (Bioinformatics and Open Science Skills) virtual events built awareness and empowered researchers with the skills and tools in open science and bioinformatics. Sensitization was achieved through a symposium, training through a workshop and train-the-trainer program, hack through mini-projects, community through conferences, and continuous meet-ups. In this paper, we discuss how we applied the framework during the BOSS events and highlight lessons learnt in planning and executing the events and their impact on the outcome of each phase. We evaluate the impact of the events through anonymous surveys. We show that sensitizing and empowering researchers with the skills works best when the participants apply the skills to real-world problems: project-based learning. Furthermore, we have demonstrated how to implement virtual events in resource-constrained settings by providing Internet and equipment support to participants, thus improving accessibility and diversity.
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spelling pubmed-102678272023-06-15 Building awareness and capacity of bioinformatics and open science skills in Kenya: a sensitize, train, hack, and collaborate model Karega, Pauline Mwaura, David K. Mwangi, Kennedy W. Wanjiku, Margaret Landi, Michael Kibet, Caleb K. Front Res Metr Anal Research Metrics and Analytics We have applied the sensitize-train-hack-community model to build awareness of and capacity in bioinformatics in Kenya. Open science is the practice of science openly and collaboratively, with tools, techniques, and data freely shared to facilitate reuse and collaboration. Open science is not a mandatory curriculum course in schools, whereas bioinformatics is relatively new in some African regions. Open science tools can significantly enhance bioinformatics, leading to increased reproducibility. However, open science and bioinformatics skills, especially blended, are still lacking among students and researchers in resource-constrained regions. We note the need to be aware of the power of open science among the bioinformatics community and a clear strategy to learn bioinformatics and open science skills for use in research. Using the OpenScienceKE framework—Sensitize, Train, Hack, Collaborate/Community—the BOSS (Bioinformatics and Open Science Skills) virtual events built awareness and empowered researchers with the skills and tools in open science and bioinformatics. Sensitization was achieved through a symposium, training through a workshop and train-the-trainer program, hack through mini-projects, community through conferences, and continuous meet-ups. In this paper, we discuss how we applied the framework during the BOSS events and highlight lessons learnt in planning and executing the events and their impact on the outcome of each phase. We evaluate the impact of the events through anonymous surveys. We show that sensitizing and empowering researchers with the skills works best when the participants apply the skills to real-world problems: project-based learning. Furthermore, we have demonstrated how to implement virtual events in resource-constrained settings by providing Internet and equipment support to participants, thus improving accessibility and diversity. Frontiers Media S.A. 2023-05-30 /pmc/articles/PMC10267827/ /pubmed/37324282 http://dx.doi.org/10.3389/frma.2023.1070390 Text en Copyright © 2023 Karega, Mwaura, Mwangi, Wanjiku, Landi and Kibet. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Research Metrics and Analytics
Karega, Pauline
Mwaura, David K.
Mwangi, Kennedy W.
Wanjiku, Margaret
Landi, Michael
Kibet, Caleb K.
Building awareness and capacity of bioinformatics and open science skills in Kenya: a sensitize, train, hack, and collaborate model
title Building awareness and capacity of bioinformatics and open science skills in Kenya: a sensitize, train, hack, and collaborate model
title_full Building awareness and capacity of bioinformatics and open science skills in Kenya: a sensitize, train, hack, and collaborate model
title_fullStr Building awareness and capacity of bioinformatics and open science skills in Kenya: a sensitize, train, hack, and collaborate model
title_full_unstemmed Building awareness and capacity of bioinformatics and open science skills in Kenya: a sensitize, train, hack, and collaborate model
title_short Building awareness and capacity of bioinformatics and open science skills in Kenya: a sensitize, train, hack, and collaborate model
title_sort building awareness and capacity of bioinformatics and open science skills in kenya: a sensitize, train, hack, and collaborate model
topic Research Metrics and Analytics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10267827/
https://www.ncbi.nlm.nih.gov/pubmed/37324282
http://dx.doi.org/10.3389/frma.2023.1070390
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