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Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application

[Image: see text] Autonomously exploring chemical reaction networks with first-principles methods can generate vast data. Especially autonomous explorations without tight constraints risk getting trapped in regions of reaction networks that are not of interest. In many cases, these regions of the ne...

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Autor principal: Unsleber, Jan P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10268957/
https://www.ncbi.nlm.nih.gov/pubmed/37216641
http://dx.doi.org/10.1021/acs.jcim.3c00102
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author Unsleber, Jan P.
author_facet Unsleber, Jan P.
author_sort Unsleber, Jan P.
collection PubMed
description [Image: see text] Autonomously exploring chemical reaction networks with first-principles methods can generate vast data. Especially autonomous explorations without tight constraints risk getting trapped in regions of reaction networks that are not of interest. In many cases, these regions of the networks are only exited once fully searched. Consequently, the required human time for analysis and computer time for data generation can make these investigations unfeasible. Here, we show how simple reaction templates can facilitate the transfer of chemical knowledge from expert input or existing data into new explorations. This process significantly accelerates reaction network explorations and improves cost-effectiveness. We discuss the definition of the reaction templates and their generation based on molecular graphs. The resulting simple filtering mechanism for autonomous reaction network investigations is exemplified with a polymerization reaction.
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spelling pubmed-102689572023-06-16 Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application Unsleber, Jan P. J Chem Inf Model [Image: see text] Autonomously exploring chemical reaction networks with first-principles methods can generate vast data. Especially autonomous explorations without tight constraints risk getting trapped in regions of reaction networks that are not of interest. In many cases, these regions of the networks are only exited once fully searched. Consequently, the required human time for analysis and computer time for data generation can make these investigations unfeasible. Here, we show how simple reaction templates can facilitate the transfer of chemical knowledge from expert input or existing data into new explorations. This process significantly accelerates reaction network explorations and improves cost-effectiveness. We discuss the definition of the reaction templates and their generation based on molecular graphs. The resulting simple filtering mechanism for autonomous reaction network investigations is exemplified with a polymerization reaction. American Chemical Society 2023-05-22 /pmc/articles/PMC10268957/ /pubmed/37216641 http://dx.doi.org/10.1021/acs.jcim.3c00102 Text en © 2023 The Author. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Unsleber, Jan P.
Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application
title Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application
title_full Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application
title_fullStr Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application
title_full_unstemmed Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application
title_short Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application
title_sort accelerating reaction network explorations with automated reaction template extraction and application
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10268957/
https://www.ncbi.nlm.nih.gov/pubmed/37216641
http://dx.doi.org/10.1021/acs.jcim.3c00102
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