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Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application
[Image: see text] Autonomously exploring chemical reaction networks with first-principles methods can generate vast data. Especially autonomous explorations without tight constraints risk getting trapped in regions of reaction networks that are not of interest. In many cases, these regions of the ne...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10268957/ https://www.ncbi.nlm.nih.gov/pubmed/37216641 http://dx.doi.org/10.1021/acs.jcim.3c00102 |
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author | Unsleber, Jan P. |
author_facet | Unsleber, Jan P. |
author_sort | Unsleber, Jan P. |
collection | PubMed |
description | [Image: see text] Autonomously exploring chemical reaction networks with first-principles methods can generate vast data. Especially autonomous explorations without tight constraints risk getting trapped in regions of reaction networks that are not of interest. In many cases, these regions of the networks are only exited once fully searched. Consequently, the required human time for analysis and computer time for data generation can make these investigations unfeasible. Here, we show how simple reaction templates can facilitate the transfer of chemical knowledge from expert input or existing data into new explorations. This process significantly accelerates reaction network explorations and improves cost-effectiveness. We discuss the definition of the reaction templates and their generation based on molecular graphs. The resulting simple filtering mechanism for autonomous reaction network investigations is exemplified with a polymerization reaction. |
format | Online Article Text |
id | pubmed-10268957 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-102689572023-06-16 Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application Unsleber, Jan P. J Chem Inf Model [Image: see text] Autonomously exploring chemical reaction networks with first-principles methods can generate vast data. Especially autonomous explorations without tight constraints risk getting trapped in regions of reaction networks that are not of interest. In many cases, these regions of the networks are only exited once fully searched. Consequently, the required human time for analysis and computer time for data generation can make these investigations unfeasible. Here, we show how simple reaction templates can facilitate the transfer of chemical knowledge from expert input or existing data into new explorations. This process significantly accelerates reaction network explorations and improves cost-effectiveness. We discuss the definition of the reaction templates and their generation based on molecular graphs. The resulting simple filtering mechanism for autonomous reaction network investigations is exemplified with a polymerization reaction. American Chemical Society 2023-05-22 /pmc/articles/PMC10268957/ /pubmed/37216641 http://dx.doi.org/10.1021/acs.jcim.3c00102 Text en © 2023 The Author. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Unsleber, Jan P. Accelerating Reaction Network Explorations with Automated Reaction Template Extraction and Application |
title | Accelerating Reaction
Network Explorations with Automated
Reaction Template Extraction and Application |
title_full | Accelerating Reaction
Network Explorations with Automated
Reaction Template Extraction and Application |
title_fullStr | Accelerating Reaction
Network Explorations with Automated
Reaction Template Extraction and Application |
title_full_unstemmed | Accelerating Reaction
Network Explorations with Automated
Reaction Template Extraction and Application |
title_short | Accelerating Reaction
Network Explorations with Automated
Reaction Template Extraction and Application |
title_sort | accelerating reaction
network explorations with automated
reaction template extraction and application |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10268957/ https://www.ncbi.nlm.nih.gov/pubmed/37216641 http://dx.doi.org/10.1021/acs.jcim.3c00102 |
work_keys_str_mv | AT unsleberjanp acceleratingreactionnetworkexplorationswithautomatedreactiontemplateextractionandapplication |