Cargando…

Variable Region Sequences Influence 16S rRNA Performance

16S rRNA gene sequences are commonly analyzed for taxonomic and phylogenetic studies because they contain variable regions that can help distinguish different genera. However, intra-genus distinction using variable region homology is often impossible due to the high overall sequence identities among...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bose, Nikhil, Moore, Sean D.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2023
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10269663/ https://www.ncbi.nlm.nih.gov/pubmed/37212673 http://dx.doi.org/10.1128/spectrum.01252-23

Ejemplares similares

The use of different 16S rRNA gene variable regions in biogeographical studies
por: Varliero, Gilda, et al.
Publicado: (2023)

Identification of Escherichia coli through analysis of 16S rRNA and 16S-23S rRNA internal transcribed spacer region sequences
por: Magray, Mohammed Siraj Ud Din, et al.
Publicado: (2011)

Influence of 16S rRNA variable region on perceived diversity of marine microbial communities of the Northern North Atlantic
por: Willis, Ciara, et al.
Publicado: (2019)

How conserved are the conserved 16S-rRNA regions?
por: Martinez-Porchas, Marcel, et al.
Publicado: (2017)

Comparison of 16S rRNA gene sequences of genus Methanobrevibacter
por: Dighe, Abhijit S, et al.
Publicado: (2004)

16S Classifier: A Tool for Fast and Accurate Taxonomic Classification of 16S rRNA Hypervariable Regions in Metagenomic Datasets
por: Chaudhary, Nikhil, et al.
Publicado: (2015)

Controlling for Contaminants in Low-Biomass 16S rRNA Gene Sequencing Experiments
por: Karstens, Lisa, et al.
Publicado: (2019)

Evaluation of 16S rRNA Hypervariable Regions for Bioweapon Species Detection by Massively Parallel Sequencing
por: Dias, Victor H. G., et al.
Publicado: (2020)

Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling
por: Fuks, Garold, et al.
Publicado: (2018)

Analysis of 16S rRNA environmental sequences using MEGAN
por: Mitra, Suparna, et al.
Publicado: (2011)

Primer and platform effects on 16S rRNA tag sequencing
por: Tremblay, Julien, et al.
Publicado: (2015)

The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences
por: Riehle, Kevin, et al.
Publicado: (2012)

Comparative performance of the 16S rRNA gene in DNA barcoding of amphibians
por: Vences, Miguel, et al.
Publicado: (2005)

Influence of 16S rRNA target region on the outcome of microbiome studies in soil and saliva samples
por: Soriano-Lerma, Ana, et al.
Publicado: (2020)

Concatenated 16S rRNA sequence analysis improves bacterial taxonomy
por: Paul, Bobby
Publicado: (2023)

A Comparison of Methods for Clustering 16S rRNA Sequences into OTUs
por: Chen, Wei, et al.
Publicado: (2013)

16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife
por: Galan, Maxime, et al.
Publicado: (2016)

Phylogenetic inference of Coxiella burnetii by 16S rRNA gene sequencing
por: McLaughlin, Heather P., et al.
Publicado: (2017)

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing
por: Prodan, Andrei, et al.
Publicado: (2020)

Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing
por: Abellan-Schneyder, Isabel, et al.
Publicado: (2021)

Benchmarking of 16S rRNA gene databases using known strain sequences
por: Dixit, Kunal, et al.
Publicado: (2021)

16S–23S rRNA Gene Intergenic Spacer Region Variability Helps Resolve Closely Related Sphingomonads
por: Tokajian, Sima, et al.
Publicado: (2016)

Identification of microflora related to growth performance in pigs based on 16S rRNA sequence analyses
por: Li, Xin-Jian, et al.
Publicado: (2020)

16S rRNA Gene Amplicon Sequencing Data for Pteris vittata Rhizosphere Soils
por: Mu’azu, Aminu Salisu, et al.
Publicado: (2023)

Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis
por: Yang, Bo, et al.
Publicado: (2016)

Influence of DNA extraction on oral microbial profiles obtained via 16S rRNA gene sequencing
por: Abusleme, Loreto, et al.
Publicado: (2014)

Phylogenies of the 16S rRNA gene and its hypervariable regions lack concordance with core genome phylogenies
por: Hassler, Hayley B., et al.
Publicado: (2022)

Distinct functional classes of ram mutations in 16S rRNA
por: McClory, Sean P., et al.
Publicado: (2014)

Identification of Comamonas species using 16S rRNA gene sequence
por: Yadav, Vimlesh, et al.
Publicado: (2009)

Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences
por: Edgar, Robert C.
Publicado: (2018)

Application of 16S rRNA next generation sequencing in ticks in Greece
por: Papa, Anna, et al.
Publicado: (2020)

Characterizing the composition of intestinal microflora by 16S rRNA gene sequencing
por: Wang, Wen-Jia, et al.
Publicado: (2020)

Application of 16S rRNA gene sequencing in Helicobacter pylori detection
por: Szymczak, Aleksander, et al.
Publicado: (2020)

Cecal microbiota of Tibetan Chickens from five geographic regions were determined by 16S rRNA sequencing
por: Zhou, Xueyan, et al.
Publicado: (2016)

Metabolomics and 16S rRNA sequencing of human colorectal cancers and adjacent mucosa
por: Loke, Mun Fai, et al.
Publicado: (2018)

Influence of 16S rRNA Hypervariable Region on Estimates of Bacterial Diversity and Community Composition in Seawater and Marine Sediment
por: Kerrigan, Zak, et al.
Publicado: (2019)

Beating Naive Bayes at Taxonomic Classification of 16S rRNA Gene Sequences
por: Ziemski, Michal, et al.
Publicado: (2021)

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
por: Schloss, Patrick D., et al.
Publicado: (2011)

Efficacy of 16S rRNA variable regions high-resolution melt analysis for bacterial pathogens identification in periprosthetic joint infections
por: Bourbour, Samaneh, et al.
Publicado: (2021)

The effect of 16S rRNA region choice on bacterial community metabarcoding results
por: Bukin, Yu. S., et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_5bts4o59qdub05gmc43tj3n7d9