HAT: Hypergraph analysis toolbox

Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions....

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Detalles Bibliográficos
Autores principales: Pickard, Joshua, Chen, Can, Salman, Rahmy, Stansbury, Cooper, Kim, Sion, Surana, Amit, Bloch, Anthony, Rajapakse, Indika
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10270569/
https://www.ncbi.nlm.nih.gov/pubmed/37276238
http://dx.doi.org/10.1371/journal.pcbi.1011190
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author Pickard, Joshua
Chen, Can
Salman, Rahmy
Stansbury, Cooper
Kim, Sion
Surana, Amit
Bloch, Anthony
Rajapakse, Indika
author_facet Pickard, Joshua
Chen, Can
Salman, Rahmy
Stansbury, Cooper
Kim, Sion
Surana, Amit
Bloch, Anthony
Rajapakse, Indika
author_sort Pickard, Joshua
collection PubMed
description Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions. Here we present the Hypergraph Analysis Toolbox (HAT), a software package for visualization and analysis of multi-way interactions in complex systems.
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spelling pubmed-102705692023-06-16 HAT: Hypergraph analysis toolbox Pickard, Joshua Chen, Can Salman, Rahmy Stansbury, Cooper Kim, Sion Surana, Amit Bloch, Anthony Rajapakse, Indika PLoS Comput Biol Research Article Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions. Here we present the Hypergraph Analysis Toolbox (HAT), a software package for visualization and analysis of multi-way interactions in complex systems. Public Library of Science 2023-06-05 /pmc/articles/PMC10270569/ /pubmed/37276238 http://dx.doi.org/10.1371/journal.pcbi.1011190 Text en © 2023 Pickard et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Pickard, Joshua
Chen, Can
Salman, Rahmy
Stansbury, Cooper
Kim, Sion
Surana, Amit
Bloch, Anthony
Rajapakse, Indika
HAT: Hypergraph analysis toolbox
title HAT: Hypergraph analysis toolbox
title_full HAT: Hypergraph analysis toolbox
title_fullStr HAT: Hypergraph analysis toolbox
title_full_unstemmed HAT: Hypergraph analysis toolbox
title_short HAT: Hypergraph analysis toolbox
title_sort hat: hypergraph analysis toolbox
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10270569/
https://www.ncbi.nlm.nih.gov/pubmed/37276238
http://dx.doi.org/10.1371/journal.pcbi.1011190
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AT kimsion hathypergraphanalysistoolbox
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