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Mechanistic studies of a lipase unveil effect of pH on hydrolysis products of small PET modules

Biocatalysis is a key technology enabling plastic recycling. However, despite advances done in the development of plastic-degrading enzymes, the molecular mechanisms that govern their catalytic performance are poorly understood, hampering the engineering of more efficient enzyme-based technologies....

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Autores principales: Świderek, Katarzyna, Velasco-Lozano, Susana, Galmés, Miquel À., Olazabal, Ion, Sardon, Haritz, López-Gallego, Fernando, Moliner, Vicent
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10272158/
https://www.ncbi.nlm.nih.gov/pubmed/37321996
http://dx.doi.org/10.1038/s41467-023-39201-1
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author Świderek, Katarzyna
Velasco-Lozano, Susana
Galmés, Miquel À.
Olazabal, Ion
Sardon, Haritz
López-Gallego, Fernando
Moliner, Vicent
author_facet Świderek, Katarzyna
Velasco-Lozano, Susana
Galmés, Miquel À.
Olazabal, Ion
Sardon, Haritz
López-Gallego, Fernando
Moliner, Vicent
author_sort Świderek, Katarzyna
collection PubMed
description Biocatalysis is a key technology enabling plastic recycling. However, despite advances done in the development of plastic-degrading enzymes, the molecular mechanisms that govern their catalytic performance are poorly understood, hampering the engineering of more efficient enzyme-based technologies. In this work, we study the hydrolysis of PET-derived diesters and PET trimers catalyzed by the highly promiscuous lipase B from Candida antarctica (CALB) through QM/MM molecular dynamics simulations supported by experimental Michaelis–Menten kinetics. The computational studies reveal the role of the pH on the CALB regioselectivity toward the hydrolysis of bis-(hydroxyethyl) terephthalate (BHET). We exploit this insight to perform a pH-controlled biotransformation that selectively hydrolyzes BHET to either its corresponding diacid or monoesters using both soluble and immobilized CALB. The discoveries presented here can be exploited for the valorization of BHET resulting from the organocatalytic depolymerization of PET.
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spelling pubmed-102721582023-06-17 Mechanistic studies of a lipase unveil effect of pH on hydrolysis products of small PET modules Świderek, Katarzyna Velasco-Lozano, Susana Galmés, Miquel À. Olazabal, Ion Sardon, Haritz López-Gallego, Fernando Moliner, Vicent Nat Commun Article Biocatalysis is a key technology enabling plastic recycling. However, despite advances done in the development of plastic-degrading enzymes, the molecular mechanisms that govern their catalytic performance are poorly understood, hampering the engineering of more efficient enzyme-based technologies. In this work, we study the hydrolysis of PET-derived diesters and PET trimers catalyzed by the highly promiscuous lipase B from Candida antarctica (CALB) through QM/MM molecular dynamics simulations supported by experimental Michaelis–Menten kinetics. The computational studies reveal the role of the pH on the CALB regioselectivity toward the hydrolysis of bis-(hydroxyethyl) terephthalate (BHET). We exploit this insight to perform a pH-controlled biotransformation that selectively hydrolyzes BHET to either its corresponding diacid or monoesters using both soluble and immobilized CALB. The discoveries presented here can be exploited for the valorization of BHET resulting from the organocatalytic depolymerization of PET. Nature Publishing Group UK 2023-06-15 /pmc/articles/PMC10272158/ /pubmed/37321996 http://dx.doi.org/10.1038/s41467-023-39201-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Świderek, Katarzyna
Velasco-Lozano, Susana
Galmés, Miquel À.
Olazabal, Ion
Sardon, Haritz
López-Gallego, Fernando
Moliner, Vicent
Mechanistic studies of a lipase unveil effect of pH on hydrolysis products of small PET modules
title Mechanistic studies of a lipase unveil effect of pH on hydrolysis products of small PET modules
title_full Mechanistic studies of a lipase unveil effect of pH on hydrolysis products of small PET modules
title_fullStr Mechanistic studies of a lipase unveil effect of pH on hydrolysis products of small PET modules
title_full_unstemmed Mechanistic studies of a lipase unveil effect of pH on hydrolysis products of small PET modules
title_short Mechanistic studies of a lipase unveil effect of pH on hydrolysis products of small PET modules
title_sort mechanistic studies of a lipase unveil effect of ph on hydrolysis products of small pet modules
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10272158/
https://www.ncbi.nlm.nih.gov/pubmed/37321996
http://dx.doi.org/10.1038/s41467-023-39201-1
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