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NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource

The National Collection of Type Cultures (NCTC) was founded on 1 January 1920 in order to fulfil a recognized need for a centralized repository for bacterial and fungal strains within the UK. It is among the longest-established collections of its kind anywhere in the world and today holds approximat...

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Autores principales: Dicks, Jo, Fazal, Mohammed-Abbas, Oliver, Karen, Grayson, Nicholas E., Turnbull, Jake D., Bane, Evangeline, Burnett, Edward, Deheer-Graham, Ana, Holroyd, Nancy, Kaushal, Dorota, Keane, Jacqueline, Langridge, Gemma, Lomax, Jane, McGregor, Hannah, Picton, Steve, Quail, Michael, Singh, Deepak, Tracey, Alan, Korlach, Jonas, Russell, Julie E., Alexander, Sarah, Parkhill, Julian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10272881/
https://www.ncbi.nlm.nih.gov/pubmed/37194944
http://dx.doi.org/10.1099/mgen.0.000976
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author Dicks, Jo
Fazal, Mohammed-Abbas
Oliver, Karen
Grayson, Nicholas E.
Turnbull, Jake D.
Bane, Evangeline
Burnett, Edward
Deheer-Graham, Ana
Holroyd, Nancy
Kaushal, Dorota
Keane, Jacqueline
Langridge, Gemma
Lomax, Jane
McGregor, Hannah
Picton, Steve
Quail, Michael
Singh, Deepak
Tracey, Alan
Korlach, Jonas
Russell, Julie E.
Alexander, Sarah
Parkhill, Julian
author_facet Dicks, Jo
Fazal, Mohammed-Abbas
Oliver, Karen
Grayson, Nicholas E.
Turnbull, Jake D.
Bane, Evangeline
Burnett, Edward
Deheer-Graham, Ana
Holroyd, Nancy
Kaushal, Dorota
Keane, Jacqueline
Langridge, Gemma
Lomax, Jane
McGregor, Hannah
Picton, Steve
Quail, Michael
Singh, Deepak
Tracey, Alan
Korlach, Jonas
Russell, Julie E.
Alexander, Sarah
Parkhill, Julian
author_sort Dicks, Jo
collection PubMed
description The National Collection of Type Cultures (NCTC) was founded on 1 January 1920 in order to fulfil a recognized need for a centralized repository for bacterial and fungal strains within the UK. It is among the longest-established collections of its kind anywhere in the world and today holds approximately 6000 type and reference bacterial strains – many of medical, scientific and veterinary importance – available to academic, health, food and veterinary institutions worldwide. Recently, a collaboration between NCTC, Pacific Biosciences and the Wellcome Sanger Institute established the NCTC3000 project to long-read sequence and assemble the genomes of up to 3000 NCTC strains. Here, at the beginning of the collection’s second century, we introduce the resulting NCTC3000 sequence read datasets, genome assemblies and annotations as a unique, historically and scientifically relevant resource for the benefit of the international bacterial research community.
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spelling pubmed-102728812023-06-17 NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource Dicks, Jo Fazal, Mohammed-Abbas Oliver, Karen Grayson, Nicholas E. Turnbull, Jake D. Bane, Evangeline Burnett, Edward Deheer-Graham, Ana Holroyd, Nancy Kaushal, Dorota Keane, Jacqueline Langridge, Gemma Lomax, Jane McGregor, Hannah Picton, Steve Quail, Michael Singh, Deepak Tracey, Alan Korlach, Jonas Russell, Julie E. Alexander, Sarah Parkhill, Julian Microb Genom Bioresources The National Collection of Type Cultures (NCTC) was founded on 1 January 1920 in order to fulfil a recognized need for a centralized repository for bacterial and fungal strains within the UK. It is among the longest-established collections of its kind anywhere in the world and today holds approximately 6000 type and reference bacterial strains – many of medical, scientific and veterinary importance – available to academic, health, food and veterinary institutions worldwide. Recently, a collaboration between NCTC, Pacific Biosciences and the Wellcome Sanger Institute established the NCTC3000 project to long-read sequence and assemble the genomes of up to 3000 NCTC strains. Here, at the beginning of the collection’s second century, we introduce the resulting NCTC3000 sequence read datasets, genome assemblies and annotations as a unique, historically and scientifically relevant resource for the benefit of the international bacterial research community. Microbiology Society 2023-05-17 /pmc/articles/PMC10272881/ /pubmed/37194944 http://dx.doi.org/10.1099/mgen.0.000976 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
spellingShingle Bioresources
Dicks, Jo
Fazal, Mohammed-Abbas
Oliver, Karen
Grayson, Nicholas E.
Turnbull, Jake D.
Bane, Evangeline
Burnett, Edward
Deheer-Graham, Ana
Holroyd, Nancy
Kaushal, Dorota
Keane, Jacqueline
Langridge, Gemma
Lomax, Jane
McGregor, Hannah
Picton, Steve
Quail, Michael
Singh, Deepak
Tracey, Alan
Korlach, Jonas
Russell, Julie E.
Alexander, Sarah
Parkhill, Julian
NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource
title NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource
title_full NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource
title_fullStr NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource
title_full_unstemmed NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource
title_short NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource
title_sort nctc3000: a century of bacterial strain collecting leads to a rich genomic data resource
topic Bioresources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10272881/
https://www.ncbi.nlm.nih.gov/pubmed/37194944
http://dx.doi.org/10.1099/mgen.0.000976
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