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Sequence Patterning, Morphology, and Dispersity in Single-Chain Nanoparticles: Insights from Simulation and Machine Learning
[Image: see text] Single-chain nanoparticles (SCNPs) are intriguing materials inspired by proteins that consist of a single precursor polymer chain that has collapsed into a stable structure. In many prospective applications, such as catalysis, the utility of a single-chain nanoparticle will intrica...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10273411/ https://www.ncbi.nlm.nih.gov/pubmed/37334192 http://dx.doi.org/10.1021/acspolymersau.3c00007 |
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author | Patel, Roshan A. Colmenares, Sophia Webb, Michael A. |
author_facet | Patel, Roshan A. Colmenares, Sophia Webb, Michael A. |
author_sort | Patel, Roshan A. |
collection | PubMed |
description | [Image: see text] Single-chain nanoparticles (SCNPs) are intriguing materials inspired by proteins that consist of a single precursor polymer chain that has collapsed into a stable structure. In many prospective applications, such as catalysis, the utility of a single-chain nanoparticle will intricately depend on the formation of a mostly specific structure or morphology. However, it is not generally well understood how to reliably control the morphology of single-chain nanoparticles. To address this knowledge gap, we simulate the formation of 7680 distinct single-chain nanoparticles from precursor chains that span a wide range of, in principle, tunable patterning characteristics of cross-linking moieties. Using a combination of molecular simulation and machine learning analyses, we show how the overall fraction of functionalization and blockiness of cross-linking moieties biases the formation of certain local and global morphological characteristics. Importantly, we illustrate and quantify the dispersity of morphologies that arise due to the stochastic nature of collapse from a well-defined sequence as well as from the ensemble of sequences that correspond to a given specification of precursor parameters. Moreover, we also examine the efficacy of precise sequence control in achieving morphological outcomes in different regimes of precursor parameters. Overall, this work critically assesses how precursor chains might be feasibly tailored to achieve given SCNP morphologies and provides a platform to pursue future sequence-based design. |
format | Online Article Text |
id | pubmed-10273411 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-102734112023-06-17 Sequence Patterning, Morphology, and Dispersity in Single-Chain Nanoparticles: Insights from Simulation and Machine Learning Patel, Roshan A. Colmenares, Sophia Webb, Michael A. ACS Polym Au [Image: see text] Single-chain nanoparticles (SCNPs) are intriguing materials inspired by proteins that consist of a single precursor polymer chain that has collapsed into a stable structure. In many prospective applications, such as catalysis, the utility of a single-chain nanoparticle will intricately depend on the formation of a mostly specific structure or morphology. However, it is not generally well understood how to reliably control the morphology of single-chain nanoparticles. To address this knowledge gap, we simulate the formation of 7680 distinct single-chain nanoparticles from precursor chains that span a wide range of, in principle, tunable patterning characteristics of cross-linking moieties. Using a combination of molecular simulation and machine learning analyses, we show how the overall fraction of functionalization and blockiness of cross-linking moieties biases the formation of certain local and global morphological characteristics. Importantly, we illustrate and quantify the dispersity of morphologies that arise due to the stochastic nature of collapse from a well-defined sequence as well as from the ensemble of sequences that correspond to a given specification of precursor parameters. Moreover, we also examine the efficacy of precise sequence control in achieving morphological outcomes in different regimes of precursor parameters. Overall, this work critically assesses how precursor chains might be feasibly tailored to achieve given SCNP morphologies and provides a platform to pursue future sequence-based design. American Chemical Society 2023-06-05 /pmc/articles/PMC10273411/ /pubmed/37334192 http://dx.doi.org/10.1021/acspolymersau.3c00007 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Patel, Roshan A. Colmenares, Sophia Webb, Michael A. Sequence Patterning, Morphology, and Dispersity in Single-Chain Nanoparticles: Insights from Simulation and Machine Learning |
title | Sequence Patterning,
Morphology, and Dispersity in
Single-Chain Nanoparticles: Insights from Simulation and Machine Learning |
title_full | Sequence Patterning,
Morphology, and Dispersity in
Single-Chain Nanoparticles: Insights from Simulation and Machine Learning |
title_fullStr | Sequence Patterning,
Morphology, and Dispersity in
Single-Chain Nanoparticles: Insights from Simulation and Machine Learning |
title_full_unstemmed | Sequence Patterning,
Morphology, and Dispersity in
Single-Chain Nanoparticles: Insights from Simulation and Machine Learning |
title_short | Sequence Patterning,
Morphology, and Dispersity in
Single-Chain Nanoparticles: Insights from Simulation and Machine Learning |
title_sort | sequence patterning,
morphology, and dispersity in
single-chain nanoparticles: insights from simulation and machine learning |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10273411/ https://www.ncbi.nlm.nih.gov/pubmed/37334192 http://dx.doi.org/10.1021/acspolymersau.3c00007 |
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