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Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse

Mouse models have been used extensively to study human coronary artery disease (CAD) or atherosclerosis and to test therapeutic targets. However, whether mouse and human share similar genetic factors and pathogenic mechanisms of atherosclerosis has not been thoroughly investigated in a data-driven m...

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Autores principales: Kurt, Zeyneb, Cheng, Jenny, McQuillen, Caden N., Saleem, Zara, Hsu, Neil, Jiang, Nuoya, Barrere-Cain, Rio, Pan, Calvin, Franzen, Oscar, Koplev, Simon, Wang, Susanna, Bjorkegren, Johan, Lusis, Aldons J., Blencowe, Montgomery, Yang, Xia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10274918/
https://www.ncbi.nlm.nih.gov/pubmed/37333408
http://dx.doi.org/10.1101/2023.06.08.544148
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author Kurt, Zeyneb
Cheng, Jenny
McQuillen, Caden N.
Saleem, Zara
Hsu, Neil
Jiang, Nuoya
Barrere-Cain, Rio
Pan, Calvin
Franzen, Oscar
Koplev, Simon
Wang, Susanna
Bjorkegren, Johan
Lusis, Aldons J.
Blencowe, Montgomery
Yang, Xia
author_facet Kurt, Zeyneb
Cheng, Jenny
McQuillen, Caden N.
Saleem, Zara
Hsu, Neil
Jiang, Nuoya
Barrere-Cain, Rio
Pan, Calvin
Franzen, Oscar
Koplev, Simon
Wang, Susanna
Bjorkegren, Johan
Lusis, Aldons J.
Blencowe, Montgomery
Yang, Xia
author_sort Kurt, Zeyneb
collection PubMed
description Mouse models have been used extensively to study human coronary artery disease (CAD) or atherosclerosis and to test therapeutic targets. However, whether mouse and human share similar genetic factors and pathogenic mechanisms of atherosclerosis has not been thoroughly investigated in a data-driven manner. We conducted a cross-species comparison study to better understand atherosclerosis pathogenesis between species by leveraging multiomics data. Specifically, we compared genetically driven and thus CAD-causal gene networks and pathways, by using human GWAS of CAD from the CARDIoGRAMplusC4D consortium and mouse GWAS of atherosclerosis from the Hybrid Mouse Diversity Panel (HMDP) followed by integration with functional multiomics human (STARNET and GTEx) and mouse (HMDP) databases. We found that mouse and human shared >75% of CAD causal pathways. Based on network topology, we then predicted key regulatory genes for both the shared pathways and species-specific pathways, which were further validated through the use of single cell data and the latest CAD GWAS. In sum, our results should serve as a much-needed guidance for which human CAD-causal pathways can or cannot be further evaluated for novel CAD therapies using mouse models.
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spelling pubmed-102749182023-06-17 Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse Kurt, Zeyneb Cheng, Jenny McQuillen, Caden N. Saleem, Zara Hsu, Neil Jiang, Nuoya Barrere-Cain, Rio Pan, Calvin Franzen, Oscar Koplev, Simon Wang, Susanna Bjorkegren, Johan Lusis, Aldons J. Blencowe, Montgomery Yang, Xia bioRxiv Article Mouse models have been used extensively to study human coronary artery disease (CAD) or atherosclerosis and to test therapeutic targets. However, whether mouse and human share similar genetic factors and pathogenic mechanisms of atherosclerosis has not been thoroughly investigated in a data-driven manner. We conducted a cross-species comparison study to better understand atherosclerosis pathogenesis between species by leveraging multiomics data. Specifically, we compared genetically driven and thus CAD-causal gene networks and pathways, by using human GWAS of CAD from the CARDIoGRAMplusC4D consortium and mouse GWAS of atherosclerosis from the Hybrid Mouse Diversity Panel (HMDP) followed by integration with functional multiomics human (STARNET and GTEx) and mouse (HMDP) databases. We found that mouse and human shared >75% of CAD causal pathways. Based on network topology, we then predicted key regulatory genes for both the shared pathways and species-specific pathways, which were further validated through the use of single cell data and the latest CAD GWAS. In sum, our results should serve as a much-needed guidance for which human CAD-causal pathways can or cannot be further evaluated for novel CAD therapies using mouse models. Cold Spring Harbor Laboratory 2023-09-20 /pmc/articles/PMC10274918/ /pubmed/37333408 http://dx.doi.org/10.1101/2023.06.08.544148 Text en https://creativecommons.org/licenses/by-nd/4.0/This work is licensed under a Creative Commons Attribution-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, and only so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Kurt, Zeyneb
Cheng, Jenny
McQuillen, Caden N.
Saleem, Zara
Hsu, Neil
Jiang, Nuoya
Barrere-Cain, Rio
Pan, Calvin
Franzen, Oscar
Koplev, Simon
Wang, Susanna
Bjorkegren, Johan
Lusis, Aldons J.
Blencowe, Montgomery
Yang, Xia
Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse
title Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse
title_full Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse
title_fullStr Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse
title_full_unstemmed Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse
title_short Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse
title_sort shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10274918/
https://www.ncbi.nlm.nih.gov/pubmed/37333408
http://dx.doi.org/10.1101/2023.06.08.544148
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