Cargando…
Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse
Mouse models have been used extensively to study human coronary artery disease (CAD) or atherosclerosis and to test therapeutic targets. However, whether mouse and human share similar genetic factors and pathogenic mechanisms of atherosclerosis has not been thoroughly investigated in a data-driven m...
Autores principales: | , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10274918/ https://www.ncbi.nlm.nih.gov/pubmed/37333408 http://dx.doi.org/10.1101/2023.06.08.544148 |
_version_ | 1785059810369077248 |
---|---|
author | Kurt, Zeyneb Cheng, Jenny McQuillen, Caden N. Saleem, Zara Hsu, Neil Jiang, Nuoya Barrere-Cain, Rio Pan, Calvin Franzen, Oscar Koplev, Simon Wang, Susanna Bjorkegren, Johan Lusis, Aldons J. Blencowe, Montgomery Yang, Xia |
author_facet | Kurt, Zeyneb Cheng, Jenny McQuillen, Caden N. Saleem, Zara Hsu, Neil Jiang, Nuoya Barrere-Cain, Rio Pan, Calvin Franzen, Oscar Koplev, Simon Wang, Susanna Bjorkegren, Johan Lusis, Aldons J. Blencowe, Montgomery Yang, Xia |
author_sort | Kurt, Zeyneb |
collection | PubMed |
description | Mouse models have been used extensively to study human coronary artery disease (CAD) or atherosclerosis and to test therapeutic targets. However, whether mouse and human share similar genetic factors and pathogenic mechanisms of atherosclerosis has not been thoroughly investigated in a data-driven manner. We conducted a cross-species comparison study to better understand atherosclerosis pathogenesis between species by leveraging multiomics data. Specifically, we compared genetically driven and thus CAD-causal gene networks and pathways, by using human GWAS of CAD from the CARDIoGRAMplusC4D consortium and mouse GWAS of atherosclerosis from the Hybrid Mouse Diversity Panel (HMDP) followed by integration with functional multiomics human (STARNET and GTEx) and mouse (HMDP) databases. We found that mouse and human shared >75% of CAD causal pathways. Based on network topology, we then predicted key regulatory genes for both the shared pathways and species-specific pathways, which were further validated through the use of single cell data and the latest CAD GWAS. In sum, our results should serve as a much-needed guidance for which human CAD-causal pathways can or cannot be further evaluated for novel CAD therapies using mouse models. |
format | Online Article Text |
id | pubmed-10274918 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-102749182023-06-17 Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse Kurt, Zeyneb Cheng, Jenny McQuillen, Caden N. Saleem, Zara Hsu, Neil Jiang, Nuoya Barrere-Cain, Rio Pan, Calvin Franzen, Oscar Koplev, Simon Wang, Susanna Bjorkegren, Johan Lusis, Aldons J. Blencowe, Montgomery Yang, Xia bioRxiv Article Mouse models have been used extensively to study human coronary artery disease (CAD) or atherosclerosis and to test therapeutic targets. However, whether mouse and human share similar genetic factors and pathogenic mechanisms of atherosclerosis has not been thoroughly investigated in a data-driven manner. We conducted a cross-species comparison study to better understand atherosclerosis pathogenesis between species by leveraging multiomics data. Specifically, we compared genetically driven and thus CAD-causal gene networks and pathways, by using human GWAS of CAD from the CARDIoGRAMplusC4D consortium and mouse GWAS of atherosclerosis from the Hybrid Mouse Diversity Panel (HMDP) followed by integration with functional multiomics human (STARNET and GTEx) and mouse (HMDP) databases. We found that mouse and human shared >75% of CAD causal pathways. Based on network topology, we then predicted key regulatory genes for both the shared pathways and species-specific pathways, which were further validated through the use of single cell data and the latest CAD GWAS. In sum, our results should serve as a much-needed guidance for which human CAD-causal pathways can or cannot be further evaluated for novel CAD therapies using mouse models. Cold Spring Harbor Laboratory 2023-09-20 /pmc/articles/PMC10274918/ /pubmed/37333408 http://dx.doi.org/10.1101/2023.06.08.544148 Text en https://creativecommons.org/licenses/by-nd/4.0/This work is licensed under a Creative Commons Attribution-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, and only so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Kurt, Zeyneb Cheng, Jenny McQuillen, Caden N. Saleem, Zara Hsu, Neil Jiang, Nuoya Barrere-Cain, Rio Pan, Calvin Franzen, Oscar Koplev, Simon Wang, Susanna Bjorkegren, Johan Lusis, Aldons J. Blencowe, Montgomery Yang, Xia Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse |
title | Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse |
title_full | Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse |
title_fullStr | Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse |
title_full_unstemmed | Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse |
title_short | Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse |
title_sort | shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10274918/ https://www.ncbi.nlm.nih.gov/pubmed/37333408 http://dx.doi.org/10.1101/2023.06.08.544148 |
work_keys_str_mv | AT kurtzeyneb sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT chengjenny sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT mcquillencadenn sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT saleemzara sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT hsuneil sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT jiangnuoya sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT barrerecainrio sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT pancalvin sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT franzenoscar sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT koplevsimon sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT wangsusanna sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT bjorkegrenjohan sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT lusisaldonsj sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT blencowemontgomery sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse AT yangxia sharedanddistinctpathwaysandnetworksgeneticallylinkedtocoronaryarterydiseasebetweenhumanandmouse |