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brainlife.io: A decentralized and open source cloud platform to support neuroscience research

Neuroscience research has expanded dramatically over the past 30 years by advancing standardization and tool development to support rigor and transparency. Consequently, the complexity of the data pipeline has also increased, hindering access to FAIR data analysis to portions of the worldwide resear...

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Autores principales: Hayashi, Soichi, Caron, Bradley A., Heinsfeld, Anibal Sólon, Vinci-Booher, Sophia, McPherson, Brent, Bullock, Daniel N., Bertò, Giulia, Niso, Guiomar, Hanekamp, Sandra, Levitas, Daniel, Ray, Kimberly, MacKenzie, Anne, Kitchell, Lindsey, Leong, Josiah K., Nascimento-Silva, Filipi, Koudoro, Serge, Willis, Hanna, Jolly, Jasleen K., Pisner, Derek, Zuidema, Taylor R., Kurzawski, Jan W., Mikellidou, Kyriaki, Bussalb, Aurore, Rorden, Christopher, Victory, Conner, Bhatia, Dheeraj, Baran Aydogan, Dogu, Yeh, Fang-Cheng F., Delogu, Franco, Guaje, Javier, Veraart, Jelle, Bollman, Steffen, Stewart, Ashley, Fischer, Jeremy, Faskowitz, Joshua, Chaumon, Maximilien, Fabrega, Ricardo, Hunt, David, McKee, Shawn, Brown, Shawn T., Heyman, Stephanie, Iacovella, Vittorio, Mejia, Amanda F., Marinazzo, Daniele, Craddock, R. Cameron, Olivetti, Emanuale, Hanson, Jamie L., Avesani, Paolo, Garyfallidis, Eleftherios, Stanzione, Dan, Carson, James, Henschel, Robert, Hancock, David Y., Stewart, Craig A., Schnyer, David, Eke, Damian O., Poldrack, Russell A., George, Nathalie, Bridge, Holly, Sani, Ilaria, Freiwald, Winrich A., Puce, Aina, Port, Nicholas L., Pestilli, Franco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cornell University 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10274934/
https://www.ncbi.nlm.nih.gov/pubmed/37332566
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author Hayashi, Soichi
Caron, Bradley A.
Heinsfeld, Anibal Sólon
Vinci-Booher, Sophia
McPherson, Brent
Bullock, Daniel N.
Bertò, Giulia
Niso, Guiomar
Hanekamp, Sandra
Levitas, Daniel
Ray, Kimberly
MacKenzie, Anne
Kitchell, Lindsey
Leong, Josiah K.
Nascimento-Silva, Filipi
Koudoro, Serge
Willis, Hanna
Jolly, Jasleen K.
Pisner, Derek
Zuidema, Taylor R.
Kurzawski, Jan W.
Mikellidou, Kyriaki
Bussalb, Aurore
Rorden, Christopher
Victory, Conner
Bhatia, Dheeraj
Baran Aydogan, Dogu
Yeh, Fang-Cheng F.
Delogu, Franco
Guaje, Javier
Veraart, Jelle
Bollman, Steffen
Stewart, Ashley
Fischer, Jeremy
Faskowitz, Joshua
Chaumon, Maximilien
Fabrega, Ricardo
Hunt, David
McKee, Shawn
Brown, Shawn T.
Heyman, Stephanie
Iacovella, Vittorio
Mejia, Amanda F.
Marinazzo, Daniele
Craddock, R. Cameron
Olivetti, Emanuale
Hanson, Jamie L.
Avesani, Paolo
Garyfallidis, Eleftherios
Stanzione, Dan
Carson, James
Henschel, Robert
Hancock, David Y.
Stewart, Craig A.
Schnyer, David
Eke, Damian O.
Poldrack, Russell A.
George, Nathalie
Bridge, Holly
Sani, Ilaria
Freiwald, Winrich A.
Puce, Aina
Port, Nicholas L.
Pestilli, Franco
author_facet Hayashi, Soichi
Caron, Bradley A.
Heinsfeld, Anibal Sólon
Vinci-Booher, Sophia
McPherson, Brent
Bullock, Daniel N.
Bertò, Giulia
Niso, Guiomar
Hanekamp, Sandra
Levitas, Daniel
Ray, Kimberly
MacKenzie, Anne
Kitchell, Lindsey
Leong, Josiah K.
Nascimento-Silva, Filipi
Koudoro, Serge
Willis, Hanna
Jolly, Jasleen K.
Pisner, Derek
Zuidema, Taylor R.
Kurzawski, Jan W.
Mikellidou, Kyriaki
Bussalb, Aurore
Rorden, Christopher
Victory, Conner
Bhatia, Dheeraj
Baran Aydogan, Dogu
Yeh, Fang-Cheng F.
Delogu, Franco
Guaje, Javier
Veraart, Jelle
Bollman, Steffen
Stewart, Ashley
Fischer, Jeremy
Faskowitz, Joshua
Chaumon, Maximilien
Fabrega, Ricardo
Hunt, David
McKee, Shawn
Brown, Shawn T.
Heyman, Stephanie
Iacovella, Vittorio
Mejia, Amanda F.
Marinazzo, Daniele
Craddock, R. Cameron
Olivetti, Emanuale
Hanson, Jamie L.
Avesani, Paolo
Garyfallidis, Eleftherios
Stanzione, Dan
Carson, James
Henschel, Robert
Hancock, David Y.
Stewart, Craig A.
Schnyer, David
Eke, Damian O.
Poldrack, Russell A.
George, Nathalie
Bridge, Holly
Sani, Ilaria
Freiwald, Winrich A.
Puce, Aina
Port, Nicholas L.
Pestilli, Franco
author_sort Hayashi, Soichi
collection PubMed
description Neuroscience research has expanded dramatically over the past 30 years by advancing standardization and tool development to support rigor and transparency. Consequently, the complexity of the data pipeline has also increased, hindering access to FAIR data analysis to portions of the worldwide research community. brainlife.io was developed to reduce these burdens and democratize modern neuroscience research across institutions and career levels. Using community software and hardware infrastructure, the platform provides open-source data standardization, management, visualization, and processing and simplifies the data pipeline. brainlife.io automatically tracks the provenance history of thousands of data objects, supporting simplicity, efficiency, and transparency in neuroscience research. Here brainlife.io’s technology and data services are described and evaluated for validity, reliability, reproducibility, replicability, and scientific utility. Using data from 4 modalities and 3,200 participants, we demonstrate that brainlife.io’s services produce outputs that adhere to best practices in modern neuroscience research.
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spelling pubmed-102749342023-06-17 brainlife.io: A decentralized and open source cloud platform to support neuroscience research Hayashi, Soichi Caron, Bradley A. Heinsfeld, Anibal Sólon Vinci-Booher, Sophia McPherson, Brent Bullock, Daniel N. Bertò, Giulia Niso, Guiomar Hanekamp, Sandra Levitas, Daniel Ray, Kimberly MacKenzie, Anne Kitchell, Lindsey Leong, Josiah K. Nascimento-Silva, Filipi Koudoro, Serge Willis, Hanna Jolly, Jasleen K. Pisner, Derek Zuidema, Taylor R. Kurzawski, Jan W. Mikellidou, Kyriaki Bussalb, Aurore Rorden, Christopher Victory, Conner Bhatia, Dheeraj Baran Aydogan, Dogu Yeh, Fang-Cheng F. Delogu, Franco Guaje, Javier Veraart, Jelle Bollman, Steffen Stewart, Ashley Fischer, Jeremy Faskowitz, Joshua Chaumon, Maximilien Fabrega, Ricardo Hunt, David McKee, Shawn Brown, Shawn T. Heyman, Stephanie Iacovella, Vittorio Mejia, Amanda F. Marinazzo, Daniele Craddock, R. Cameron Olivetti, Emanuale Hanson, Jamie L. Avesani, Paolo Garyfallidis, Eleftherios Stanzione, Dan Carson, James Henschel, Robert Hancock, David Y. Stewart, Craig A. Schnyer, David Eke, Damian O. Poldrack, Russell A. George, Nathalie Bridge, Holly Sani, Ilaria Freiwald, Winrich A. Puce, Aina Port, Nicholas L. Pestilli, Franco ArXiv Article Neuroscience research has expanded dramatically over the past 30 years by advancing standardization and tool development to support rigor and transparency. Consequently, the complexity of the data pipeline has also increased, hindering access to FAIR data analysis to portions of the worldwide research community. brainlife.io was developed to reduce these burdens and democratize modern neuroscience research across institutions and career levels. Using community software and hardware infrastructure, the platform provides open-source data standardization, management, visualization, and processing and simplifies the data pipeline. brainlife.io automatically tracks the provenance history of thousands of data objects, supporting simplicity, efficiency, and transparency in neuroscience research. Here brainlife.io’s technology and data services are described and evaluated for validity, reliability, reproducibility, replicability, and scientific utility. Using data from 4 modalities and 3,200 participants, we demonstrate that brainlife.io’s services produce outputs that adhere to best practices in modern neuroscience research. Cornell University 2023-08-11 /pmc/articles/PMC10274934/ /pubmed/37332566 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Hayashi, Soichi
Caron, Bradley A.
Heinsfeld, Anibal Sólon
Vinci-Booher, Sophia
McPherson, Brent
Bullock, Daniel N.
Bertò, Giulia
Niso, Guiomar
Hanekamp, Sandra
Levitas, Daniel
Ray, Kimberly
MacKenzie, Anne
Kitchell, Lindsey
Leong, Josiah K.
Nascimento-Silva, Filipi
Koudoro, Serge
Willis, Hanna
Jolly, Jasleen K.
Pisner, Derek
Zuidema, Taylor R.
Kurzawski, Jan W.
Mikellidou, Kyriaki
Bussalb, Aurore
Rorden, Christopher
Victory, Conner
Bhatia, Dheeraj
Baran Aydogan, Dogu
Yeh, Fang-Cheng F.
Delogu, Franco
Guaje, Javier
Veraart, Jelle
Bollman, Steffen
Stewart, Ashley
Fischer, Jeremy
Faskowitz, Joshua
Chaumon, Maximilien
Fabrega, Ricardo
Hunt, David
McKee, Shawn
Brown, Shawn T.
Heyman, Stephanie
Iacovella, Vittorio
Mejia, Amanda F.
Marinazzo, Daniele
Craddock, R. Cameron
Olivetti, Emanuale
Hanson, Jamie L.
Avesani, Paolo
Garyfallidis, Eleftherios
Stanzione, Dan
Carson, James
Henschel, Robert
Hancock, David Y.
Stewart, Craig A.
Schnyer, David
Eke, Damian O.
Poldrack, Russell A.
George, Nathalie
Bridge, Holly
Sani, Ilaria
Freiwald, Winrich A.
Puce, Aina
Port, Nicholas L.
Pestilli, Franco
brainlife.io: A decentralized and open source cloud platform to support neuroscience research
title brainlife.io: A decentralized and open source cloud platform to support neuroscience research
title_full brainlife.io: A decentralized and open source cloud platform to support neuroscience research
title_fullStr brainlife.io: A decentralized and open source cloud platform to support neuroscience research
title_full_unstemmed brainlife.io: A decentralized and open source cloud platform to support neuroscience research
title_short brainlife.io: A decentralized and open source cloud platform to support neuroscience research
title_sort brainlife.io: a decentralized and open source cloud platform to support neuroscience research
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10274934/
https://www.ncbi.nlm.nih.gov/pubmed/37332566
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