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Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry
Decline disease is a new disease that has recently caused severe damage in bayberry industry. The effect of biochar on decline disease was determined by investigating the changes in the vegetative growth and fruit quality of bayberry trees as well as soil physical and chemical properties, microbial...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10275294/ https://www.ncbi.nlm.nih.gov/pubmed/37333636 http://dx.doi.org/10.3389/fmicb.2023.1154886 |
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author | Ren, Haiying Guo, Hao Shafiqul Islam, Mohammad Zaki, Haitham E. M. Wang, Zhenshuo Wang, Hongyan Qi, Xingjiang Guo, Junning Sun, Li Wang, Qi Li, Bin Li, Gang Radwan, Khlode S. A. |
author_facet | Ren, Haiying Guo, Hao Shafiqul Islam, Mohammad Zaki, Haitham E. M. Wang, Zhenshuo Wang, Hongyan Qi, Xingjiang Guo, Junning Sun, Li Wang, Qi Li, Bin Li, Gang Radwan, Khlode S. A. |
author_sort | Ren, Haiying |
collection | PubMed |
description | Decline disease is a new disease that has recently caused severe damage in bayberry industry. The effect of biochar on decline disease was determined by investigating the changes in the vegetative growth and fruit quality of bayberry trees as well as soil physical and chemical properties, microbial community structure, and metabolites. Results indicated that the application of biochar could improve the vigor and fruit quality of diseased trees, and rhizosphere soil microbial diversity at the levels of phyla, orders, and genera. The relative abundance of Mycobacterium, Crossiella, Geminibasidium, and Fusarium were significantly increased, while Acidothermus, Bryobacter, Acidibacter, Cladophialophora, Mycena, and Rickenella were significantly decreased by biochar in rhizosphere soil of decline diseased bayberry. Analysis of redundancies (RDA) of microbial communities and soil characteristics revealed that the composition of bacterial and fungal communities was significantly affected by the pH, organic matter, alkali hydrolyzable nitrogen, available phosphorus, available potassium, exchangeable calcium and exchangeable magnesium in bayberry rhizosphere soil, and the contribution rates to fungi were larger than those to bacteria at the genus level. Biochar greatly influenced the metabolomics distribution of rhizosphere soils of decline disease bayberry. One hundred and nine different metabolites from both the presence and absence of biochar, mainly include acid, alcohol, ester, amine, amino acid, sterol, sugar, and other secondary metabolites, of which the contents of 52 metabolites were increased significantly such as aconitic acid, threonic acid, pimelic acid, epicatechin, and lyxose. The contents of 57 metabolites decreased significantly, such as conduritol β-expoxide, zymosterol, palatinitol, quinic acid, and isohexoic acid. There was a great difference between the absence and presence of biochar in 10 metabolic pathways, including thiamine metabolism, arginine and proline metabolism, glutathione metabolism, ATP-binding cassette (ABC) transporters, butanoate metabolism, cyanoamino acid metabolism, tyrosine metabolism, phenylalanine metabolism, phosphotransferase system (pts), and lysine degradation. There was a significant correlation between the relative content of microbial species and the content of secondary metabolites in rhizosphere soil at the levels of bacterial and fungal phyla, order, and genus. Overall, this study highlighted the significant influence of biochar in decline disease by regulating soil microbial community, physical and chemical properties, and secondary metabolites in rhizosphere soil, which provided a novel strategy for managing bayberry decline disease. |
format | Online Article Text |
id | pubmed-10275294 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102752942023-06-17 Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry Ren, Haiying Guo, Hao Shafiqul Islam, Mohammad Zaki, Haitham E. M. Wang, Zhenshuo Wang, Hongyan Qi, Xingjiang Guo, Junning Sun, Li Wang, Qi Li, Bin Li, Gang Radwan, Khlode S. A. Front Microbiol Microbiology Decline disease is a new disease that has recently caused severe damage in bayberry industry. The effect of biochar on decline disease was determined by investigating the changes in the vegetative growth and fruit quality of bayberry trees as well as soil physical and chemical properties, microbial community structure, and metabolites. Results indicated that the application of biochar could improve the vigor and fruit quality of diseased trees, and rhizosphere soil microbial diversity at the levels of phyla, orders, and genera. The relative abundance of Mycobacterium, Crossiella, Geminibasidium, and Fusarium were significantly increased, while Acidothermus, Bryobacter, Acidibacter, Cladophialophora, Mycena, and Rickenella were significantly decreased by biochar in rhizosphere soil of decline diseased bayberry. Analysis of redundancies (RDA) of microbial communities and soil characteristics revealed that the composition of bacterial and fungal communities was significantly affected by the pH, organic matter, alkali hydrolyzable nitrogen, available phosphorus, available potassium, exchangeable calcium and exchangeable magnesium in bayberry rhizosphere soil, and the contribution rates to fungi were larger than those to bacteria at the genus level. Biochar greatly influenced the metabolomics distribution of rhizosphere soils of decline disease bayberry. One hundred and nine different metabolites from both the presence and absence of biochar, mainly include acid, alcohol, ester, amine, amino acid, sterol, sugar, and other secondary metabolites, of which the contents of 52 metabolites were increased significantly such as aconitic acid, threonic acid, pimelic acid, epicatechin, and lyxose. The contents of 57 metabolites decreased significantly, such as conduritol β-expoxide, zymosterol, palatinitol, quinic acid, and isohexoic acid. There was a great difference between the absence and presence of biochar in 10 metabolic pathways, including thiamine metabolism, arginine and proline metabolism, glutathione metabolism, ATP-binding cassette (ABC) transporters, butanoate metabolism, cyanoamino acid metabolism, tyrosine metabolism, phenylalanine metabolism, phosphotransferase system (pts), and lysine degradation. There was a significant correlation between the relative content of microbial species and the content of secondary metabolites in rhizosphere soil at the levels of bacterial and fungal phyla, order, and genus. Overall, this study highlighted the significant influence of biochar in decline disease by regulating soil microbial community, physical and chemical properties, and secondary metabolites in rhizosphere soil, which provided a novel strategy for managing bayberry decline disease. Frontiers Media S.A. 2023-05-12 /pmc/articles/PMC10275294/ /pubmed/37333636 http://dx.doi.org/10.3389/fmicb.2023.1154886 Text en Copyright © 2023 Ren, Guo, Shafiqul Islam, Zaki, Wang, Wang, Qi, Guo, Sun, Wang, Li, Li and Radwan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Ren, Haiying Guo, Hao Shafiqul Islam, Mohammad Zaki, Haitham E. M. Wang, Zhenshuo Wang, Hongyan Qi, Xingjiang Guo, Junning Sun, Li Wang, Qi Li, Bin Li, Gang Radwan, Khlode S. A. Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry |
title | Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry |
title_full | Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry |
title_fullStr | Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry |
title_full_unstemmed | Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry |
title_short | Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry |
title_sort | improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10275294/ https://www.ncbi.nlm.nih.gov/pubmed/37333636 http://dx.doi.org/10.3389/fmicb.2023.1154886 |
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