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Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry

Decline disease is a new disease that has recently caused severe damage in bayberry industry. The effect of biochar on decline disease was determined by investigating the changes in the vegetative growth and fruit quality of bayberry trees as well as soil physical and chemical properties, microbial...

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Autores principales: Ren, Haiying, Guo, Hao, Shafiqul Islam, Mohammad, Zaki, Haitham E. M., Wang, Zhenshuo, Wang, Hongyan, Qi, Xingjiang, Guo, Junning, Sun, Li, Wang, Qi, Li, Bin, Li, Gang, Radwan, Khlode S. A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10275294/
https://www.ncbi.nlm.nih.gov/pubmed/37333636
http://dx.doi.org/10.3389/fmicb.2023.1154886
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author Ren, Haiying
Guo, Hao
Shafiqul Islam, Mohammad
Zaki, Haitham E. M.
Wang, Zhenshuo
Wang, Hongyan
Qi, Xingjiang
Guo, Junning
Sun, Li
Wang, Qi
Li, Bin
Li, Gang
Radwan, Khlode S. A.
author_facet Ren, Haiying
Guo, Hao
Shafiqul Islam, Mohammad
Zaki, Haitham E. M.
Wang, Zhenshuo
Wang, Hongyan
Qi, Xingjiang
Guo, Junning
Sun, Li
Wang, Qi
Li, Bin
Li, Gang
Radwan, Khlode S. A.
author_sort Ren, Haiying
collection PubMed
description Decline disease is a new disease that has recently caused severe damage in bayberry industry. The effect of biochar on decline disease was determined by investigating the changes in the vegetative growth and fruit quality of bayberry trees as well as soil physical and chemical properties, microbial community structure, and metabolites. Results indicated that the application of biochar could improve the vigor and fruit quality of diseased trees, and rhizosphere soil microbial diversity at the levels of phyla, orders, and genera. The relative abundance of Mycobacterium, Crossiella, Geminibasidium, and Fusarium were significantly increased, while Acidothermus, Bryobacter, Acidibacter, Cladophialophora, Mycena, and Rickenella were significantly decreased by biochar in rhizosphere soil of decline diseased bayberry. Analysis of redundancies (RDA) of microbial communities and soil characteristics revealed that the composition of bacterial and fungal communities was significantly affected by the pH, organic matter, alkali hydrolyzable nitrogen, available phosphorus, available potassium, exchangeable calcium and exchangeable magnesium in bayberry rhizosphere soil, and the contribution rates to fungi were larger than those to bacteria at the genus level. Biochar greatly influenced the metabolomics distribution of rhizosphere soils of decline disease bayberry. One hundred and nine different metabolites from both the presence and absence of biochar, mainly include acid, alcohol, ester, amine, amino acid, sterol, sugar, and other secondary metabolites, of which the contents of 52 metabolites were increased significantly such as aconitic acid, threonic acid, pimelic acid, epicatechin, and lyxose. The contents of 57 metabolites decreased significantly, such as conduritol β-expoxide, zymosterol, palatinitol, quinic acid, and isohexoic acid. There was a great difference between the absence and presence of biochar in 10 metabolic pathways, including thiamine metabolism, arginine and proline metabolism, glutathione metabolism, ATP-binding cassette (ABC) transporters, butanoate metabolism, cyanoamino acid metabolism, tyrosine metabolism, phenylalanine metabolism, phosphotransferase system (pts), and lysine degradation. There was a significant correlation between the relative content of microbial species and the content of secondary metabolites in rhizosphere soil at the levels of bacterial and fungal phyla, order, and genus. Overall, this study highlighted the significant influence of biochar in decline disease by regulating soil microbial community, physical and chemical properties, and secondary metabolites in rhizosphere soil, which provided a novel strategy for managing bayberry decline disease.
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spelling pubmed-102752942023-06-17 Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry Ren, Haiying Guo, Hao Shafiqul Islam, Mohammad Zaki, Haitham E. M. Wang, Zhenshuo Wang, Hongyan Qi, Xingjiang Guo, Junning Sun, Li Wang, Qi Li, Bin Li, Gang Radwan, Khlode S. A. Front Microbiol Microbiology Decline disease is a new disease that has recently caused severe damage in bayberry industry. The effect of biochar on decline disease was determined by investigating the changes in the vegetative growth and fruit quality of bayberry trees as well as soil physical and chemical properties, microbial community structure, and metabolites. Results indicated that the application of biochar could improve the vigor and fruit quality of diseased trees, and rhizosphere soil microbial diversity at the levels of phyla, orders, and genera. The relative abundance of Mycobacterium, Crossiella, Geminibasidium, and Fusarium were significantly increased, while Acidothermus, Bryobacter, Acidibacter, Cladophialophora, Mycena, and Rickenella were significantly decreased by biochar in rhizosphere soil of decline diseased bayberry. Analysis of redundancies (RDA) of microbial communities and soil characteristics revealed that the composition of bacterial and fungal communities was significantly affected by the pH, organic matter, alkali hydrolyzable nitrogen, available phosphorus, available potassium, exchangeable calcium and exchangeable magnesium in bayberry rhizosphere soil, and the contribution rates to fungi were larger than those to bacteria at the genus level. Biochar greatly influenced the metabolomics distribution of rhizosphere soils of decline disease bayberry. One hundred and nine different metabolites from both the presence and absence of biochar, mainly include acid, alcohol, ester, amine, amino acid, sterol, sugar, and other secondary metabolites, of which the contents of 52 metabolites were increased significantly such as aconitic acid, threonic acid, pimelic acid, epicatechin, and lyxose. The contents of 57 metabolites decreased significantly, such as conduritol β-expoxide, zymosterol, palatinitol, quinic acid, and isohexoic acid. There was a great difference between the absence and presence of biochar in 10 metabolic pathways, including thiamine metabolism, arginine and proline metabolism, glutathione metabolism, ATP-binding cassette (ABC) transporters, butanoate metabolism, cyanoamino acid metabolism, tyrosine metabolism, phenylalanine metabolism, phosphotransferase system (pts), and lysine degradation. There was a significant correlation between the relative content of microbial species and the content of secondary metabolites in rhizosphere soil at the levels of bacterial and fungal phyla, order, and genus. Overall, this study highlighted the significant influence of biochar in decline disease by regulating soil microbial community, physical and chemical properties, and secondary metabolites in rhizosphere soil, which provided a novel strategy for managing bayberry decline disease. Frontiers Media S.A. 2023-05-12 /pmc/articles/PMC10275294/ /pubmed/37333636 http://dx.doi.org/10.3389/fmicb.2023.1154886 Text en Copyright © 2023 Ren, Guo, Shafiqul Islam, Zaki, Wang, Wang, Qi, Guo, Sun, Wang, Li, Li and Radwan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Ren, Haiying
Guo, Hao
Shafiqul Islam, Mohammad
Zaki, Haitham E. M.
Wang, Zhenshuo
Wang, Hongyan
Qi, Xingjiang
Guo, Junning
Sun, Li
Wang, Qi
Li, Bin
Li, Gang
Radwan, Khlode S. A.
Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry
title Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry
title_full Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry
title_fullStr Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry
title_full_unstemmed Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry
title_short Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry
title_sort improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberry
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10275294/
https://www.ncbi.nlm.nih.gov/pubmed/37333636
http://dx.doi.org/10.3389/fmicb.2023.1154886
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