Cargando…

Ribozyme activity modulates the physical properties of RNA–peptide coacervates

Condensed coacervate phases are now understood to be important features of modern cell biology, as well as valuable protocellular models in origin-of-life studies and synthetic biology. In each of these fields, the development of model systems with varied and tuneable material properties is of great...

Descripción completa

Detalles Bibliográficos
Autores principales: Le Vay, Kristian Kyle, Salibi, Elia, Ghosh, Basusree, Tang, TY Dora, Mutschler, Hannes
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10275638/
https://www.ncbi.nlm.nih.gov/pubmed/37326308
http://dx.doi.org/10.7554/eLife.83543
_version_ 1785059913878208512
author Le Vay, Kristian Kyle
Salibi, Elia
Ghosh, Basusree
Tang, TY Dora
Mutschler, Hannes
author_facet Le Vay, Kristian Kyle
Salibi, Elia
Ghosh, Basusree
Tang, TY Dora
Mutschler, Hannes
author_sort Le Vay, Kristian Kyle
collection PubMed
description Condensed coacervate phases are now understood to be important features of modern cell biology, as well as valuable protocellular models in origin-of-life studies and synthetic biology. In each of these fields, the development of model systems with varied and tuneable material properties is of great importance for replicating properties of life. Here, we develop a ligase ribozyme system capable of concatenating short RNA fragments into long chains. Our results show that the formation of coacervate microdroplets with the ligase ribozyme and poly(L-lysine) enhances ribozyme rate and yield, which in turn increases the length of the anionic polymer component of the system and imparts specific physical properties to the droplets. Droplets containing active ribozyme sequences resist growth, do not wet or spread on unpassivated surfaces, and exhibit reduced transfer of RNA between droplets when compared to controls containing inactive sequences. These altered behaviours, which stem from RNA sequence and catalytic activity, constitute a specific phenotype and potential fitness advantage, opening the door to selection and evolution experiments based on a genotype–phenotype linkage.
format Online
Article
Text
id pubmed-10275638
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher eLife Sciences Publications, Ltd
record_format MEDLINE/PubMed
spelling pubmed-102756382023-06-17 Ribozyme activity modulates the physical properties of RNA–peptide coacervates Le Vay, Kristian Kyle Salibi, Elia Ghosh, Basusree Tang, TY Dora Mutschler, Hannes eLife Biochemistry and Chemical Biology Condensed coacervate phases are now understood to be important features of modern cell biology, as well as valuable protocellular models in origin-of-life studies and synthetic biology. In each of these fields, the development of model systems with varied and tuneable material properties is of great importance for replicating properties of life. Here, we develop a ligase ribozyme system capable of concatenating short RNA fragments into long chains. Our results show that the formation of coacervate microdroplets with the ligase ribozyme and poly(L-lysine) enhances ribozyme rate and yield, which in turn increases the length of the anionic polymer component of the system and imparts specific physical properties to the droplets. Droplets containing active ribozyme sequences resist growth, do not wet or spread on unpassivated surfaces, and exhibit reduced transfer of RNA between droplets when compared to controls containing inactive sequences. These altered behaviours, which stem from RNA sequence and catalytic activity, constitute a specific phenotype and potential fitness advantage, opening the door to selection and evolution experiments based on a genotype–phenotype linkage. eLife Sciences Publications, Ltd 2023-06-16 /pmc/articles/PMC10275638/ /pubmed/37326308 http://dx.doi.org/10.7554/eLife.83543 Text en © 2023, Le Vay, Salibi et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Biochemistry and Chemical Biology
Le Vay, Kristian Kyle
Salibi, Elia
Ghosh, Basusree
Tang, TY Dora
Mutschler, Hannes
Ribozyme activity modulates the physical properties of RNA–peptide coacervates
title Ribozyme activity modulates the physical properties of RNA–peptide coacervates
title_full Ribozyme activity modulates the physical properties of RNA–peptide coacervates
title_fullStr Ribozyme activity modulates the physical properties of RNA–peptide coacervates
title_full_unstemmed Ribozyme activity modulates the physical properties of RNA–peptide coacervates
title_short Ribozyme activity modulates the physical properties of RNA–peptide coacervates
title_sort ribozyme activity modulates the physical properties of rna–peptide coacervates
topic Biochemistry and Chemical Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10275638/
https://www.ncbi.nlm.nih.gov/pubmed/37326308
http://dx.doi.org/10.7554/eLife.83543
work_keys_str_mv AT levaykristiankyle ribozymeactivitymodulatesthephysicalpropertiesofrnapeptidecoacervates
AT salibielia ribozymeactivitymodulatesthephysicalpropertiesofrnapeptidecoacervates
AT ghoshbasusree ribozymeactivitymodulatesthephysicalpropertiesofrnapeptidecoacervates
AT tangtydora ribozymeactivitymodulatesthephysicalpropertiesofrnapeptidecoacervates
AT mutschlerhannes ribozymeactivitymodulatesthephysicalpropertiesofrnapeptidecoacervates