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A global perspective on the intrinsic dimensionality of COVID-19 data

We develop a novel global perspective of the complexity of the relationships between three COVID-19 datasets, the standardised per-capita growth rate of COVID-19 cases and deaths, and the Oxford Coronavirus Government Response Tracker COVID-19 Stringency Index (CSI) which is a measure describing a c...

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Autores principales: Varghese, Abhishek, Santos-Fernandez, Edgar, Denti, Francesco, Mira, Antonietta, Mengersen, Kerrie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10276009/
https://www.ncbi.nlm.nih.gov/pubmed/37328523
http://dx.doi.org/10.1038/s41598-023-36116-1
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author Varghese, Abhishek
Santos-Fernandez, Edgar
Denti, Francesco
Mira, Antonietta
Mengersen, Kerrie
author_facet Varghese, Abhishek
Santos-Fernandez, Edgar
Denti, Francesco
Mira, Antonietta
Mengersen, Kerrie
author_sort Varghese, Abhishek
collection PubMed
description We develop a novel global perspective of the complexity of the relationships between three COVID-19 datasets, the standardised per-capita growth rate of COVID-19 cases and deaths, and the Oxford Coronavirus Government Response Tracker COVID-19 Stringency Index (CSI) which is a measure describing a country’s stringency of lockdown policies. We use a state-of-the-art heterogeneous intrinsic dimension estimator implemented as a Bayesian mixture model, called Hidalgo. Our findings suggest that these highly popular COVID-19 statistics may project onto two low-dimensional manifolds without significant information loss, suggesting that COVID-19 data dynamics are generated from a latent mechanism characterised by a few important variables. The low dimensionality imply a strong dependency among the standardised growth rates of cases and deaths per capita and the CSI for countries over 2020–2021. Importantly, we identify spatial autocorrelation in the intrinsic dimension distribution worldwide. The results show how high-income countries are more prone to lie on low-dimensional manifolds, likely arising from aging populations, comorbidities, and increased per capita mortality burden from COVID-19. Finally, the temporal stratification of the dataset allows the examination of the intrinsic dimension at a more granular level throughout the pandemic.
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spelling pubmed-102760092023-06-18 A global perspective on the intrinsic dimensionality of COVID-19 data Varghese, Abhishek Santos-Fernandez, Edgar Denti, Francesco Mira, Antonietta Mengersen, Kerrie Sci Rep Article We develop a novel global perspective of the complexity of the relationships between three COVID-19 datasets, the standardised per-capita growth rate of COVID-19 cases and deaths, and the Oxford Coronavirus Government Response Tracker COVID-19 Stringency Index (CSI) which is a measure describing a country’s stringency of lockdown policies. We use a state-of-the-art heterogeneous intrinsic dimension estimator implemented as a Bayesian mixture model, called Hidalgo. Our findings suggest that these highly popular COVID-19 statistics may project onto two low-dimensional manifolds without significant information loss, suggesting that COVID-19 data dynamics are generated from a latent mechanism characterised by a few important variables. The low dimensionality imply a strong dependency among the standardised growth rates of cases and deaths per capita and the CSI for countries over 2020–2021. Importantly, we identify spatial autocorrelation in the intrinsic dimension distribution worldwide. The results show how high-income countries are more prone to lie on low-dimensional manifolds, likely arising from aging populations, comorbidities, and increased per capita mortality burden from COVID-19. Finally, the temporal stratification of the dataset allows the examination of the intrinsic dimension at a more granular level throughout the pandemic. Nature Publishing Group UK 2023-06-16 /pmc/articles/PMC10276009/ /pubmed/37328523 http://dx.doi.org/10.1038/s41598-023-36116-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Varghese, Abhishek
Santos-Fernandez, Edgar
Denti, Francesco
Mira, Antonietta
Mengersen, Kerrie
A global perspective on the intrinsic dimensionality of COVID-19 data
title A global perspective on the intrinsic dimensionality of COVID-19 data
title_full A global perspective on the intrinsic dimensionality of COVID-19 data
title_fullStr A global perspective on the intrinsic dimensionality of COVID-19 data
title_full_unstemmed A global perspective on the intrinsic dimensionality of COVID-19 data
title_short A global perspective on the intrinsic dimensionality of COVID-19 data
title_sort global perspective on the intrinsic dimensionality of covid-19 data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10276009/
https://www.ncbi.nlm.nih.gov/pubmed/37328523
http://dx.doi.org/10.1038/s41598-023-36116-1
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