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Waves in a Stochastic Cell Motility Model
In Bhattacharya et al. (Sci Adv 6(32):7682, 2020), a set of chemical reactions involved in the dynamics of actin waves in cells was studied at two levels. The microscopic level, where the individual chemical reactions are directly modelled using Gillespie-type algorithms, and on a macroscopic level...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10276800/ https://www.ncbi.nlm.nih.gov/pubmed/37329390 http://dx.doi.org/10.1007/s11538-023-01164-1 |
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author | Hamster, Christian van Heijster, Peter |
author_facet | Hamster, Christian van Heijster, Peter |
author_sort | Hamster, Christian |
collection | PubMed |
description | In Bhattacharya et al. (Sci Adv 6(32):7682, 2020), a set of chemical reactions involved in the dynamics of actin waves in cells was studied at two levels. The microscopic level, where the individual chemical reactions are directly modelled using Gillespie-type algorithms, and on a macroscopic level where a deterministic reaction–diffusion equation arises as the large-scale limit of the underlying chemical reactions. In this work, we derive, and subsequently study, the related mesoscopic stochastic reaction–diffusion system, or chemical Langevin equation, that arises from the same set of chemical reactions. We explain how the stochastic patterns that arise from this equation can be used to understand the experimentally observed dynamics from Bhattacharya et al. In particular, we argue that the mesoscopic stochastic model better captures the microscopic behaviour than the deterministic reaction–diffusion equation, while being more amenable for mathematical analysis and numerical simulations than the microscopic model. |
format | Online Article Text |
id | pubmed-10276800 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-102768002023-06-19 Waves in a Stochastic Cell Motility Model Hamster, Christian van Heijster, Peter Bull Math Biol Original Article In Bhattacharya et al. (Sci Adv 6(32):7682, 2020), a set of chemical reactions involved in the dynamics of actin waves in cells was studied at two levels. The microscopic level, where the individual chemical reactions are directly modelled using Gillespie-type algorithms, and on a macroscopic level where a deterministic reaction–diffusion equation arises as the large-scale limit of the underlying chemical reactions. In this work, we derive, and subsequently study, the related mesoscopic stochastic reaction–diffusion system, or chemical Langevin equation, that arises from the same set of chemical reactions. We explain how the stochastic patterns that arise from this equation can be used to understand the experimentally observed dynamics from Bhattacharya et al. In particular, we argue that the mesoscopic stochastic model better captures the microscopic behaviour than the deterministic reaction–diffusion equation, while being more amenable for mathematical analysis and numerical simulations than the microscopic model. Springer US 2023-06-17 2023 /pmc/articles/PMC10276800/ /pubmed/37329390 http://dx.doi.org/10.1007/s11538-023-01164-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Hamster, Christian van Heijster, Peter Waves in a Stochastic Cell Motility Model |
title | Waves in a Stochastic Cell Motility Model |
title_full | Waves in a Stochastic Cell Motility Model |
title_fullStr | Waves in a Stochastic Cell Motility Model |
title_full_unstemmed | Waves in a Stochastic Cell Motility Model |
title_short | Waves in a Stochastic Cell Motility Model |
title_sort | waves in a stochastic cell motility model |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10276800/ https://www.ncbi.nlm.nih.gov/pubmed/37329390 http://dx.doi.org/10.1007/s11538-023-01164-1 |
work_keys_str_mv | AT hamsterchristian wavesinastochasticcellmotilitymodel AT vanheijsterpeter wavesinastochasticcellmotilitymodel |