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Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola

Genomic data for priapulans are limited to a single species, restricting broad comparative analyses and thorough interrogation of questions spanning phylogenomics, ecdysozoan physiology, and development. To help fill this void, we present here a high-quality priapulan genome for the meiofaunal speci...

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Autores principales: Lord, Arianna, Cunha, Tauana J, de Medeiros, Bruno A S, Sato, Shoyo, Khost, Danielle E, Sackton, Timothy B, Giribet, Gonzalo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280001/
https://www.ncbi.nlm.nih.gov/pubmed/37279503
http://dx.doi.org/10.1093/gbe/evad103
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author Lord, Arianna
Cunha, Tauana J
de Medeiros, Bruno A S
Sato, Shoyo
Khost, Danielle E
Sackton, Timothy B
Giribet, Gonzalo
author_facet Lord, Arianna
Cunha, Tauana J
de Medeiros, Bruno A S
Sato, Shoyo
Khost, Danielle E
Sackton, Timothy B
Giribet, Gonzalo
author_sort Lord, Arianna
collection PubMed
description Genomic data for priapulans are limited to a single species, restricting broad comparative analyses and thorough interrogation of questions spanning phylogenomics, ecdysozoan physiology, and development. To help fill this void, we present here a high-quality priapulan genome for the meiofaunal species Tubiluchus corallicola. Our assembly combines Nanopore and Illumina sequencing technologies and makes use of a whole-genome amplification, to generate enough DNA to sequence this small meiofaunal species. We generated a moderately contiguous assembly (2,547 scaffolds), with a high level of completeness (metazoan BUSCOs n = 954, single-copy complete = 89.6%, duplicated = 3.9%, fragmented = 3.5%, and missing = 3.0%). We then screened the genome for homologs of the Halloween genes, key genes implicated in the ecdysis (molting) pathway of arthropods, recovering a putative homolog of shadow. The presence of a shadow ortholog in two priapulan genomes suggests that the Halloween genes may not have evolved in a stepwise manner in Panarthropoda, as previously thought, but may have a deeper origin at the base of Ecdysozoa.
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spelling pubmed-102800012023-06-21 Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola Lord, Arianna Cunha, Tauana J de Medeiros, Bruno A S Sato, Shoyo Khost, Danielle E Sackton, Timothy B Giribet, Gonzalo Genome Biol Evol Genome Report Genomic data for priapulans are limited to a single species, restricting broad comparative analyses and thorough interrogation of questions spanning phylogenomics, ecdysozoan physiology, and development. To help fill this void, we present here a high-quality priapulan genome for the meiofaunal species Tubiluchus corallicola. Our assembly combines Nanopore and Illumina sequencing technologies and makes use of a whole-genome amplification, to generate enough DNA to sequence this small meiofaunal species. We generated a moderately contiguous assembly (2,547 scaffolds), with a high level of completeness (metazoan BUSCOs n = 954, single-copy complete = 89.6%, duplicated = 3.9%, fragmented = 3.5%, and missing = 3.0%). We then screened the genome for homologs of the Halloween genes, key genes implicated in the ecdysis (molting) pathway of arthropods, recovering a putative homolog of shadow. The presence of a shadow ortholog in two priapulan genomes suggests that the Halloween genes may not have evolved in a stepwise manner in Panarthropoda, as previously thought, but may have a deeper origin at the base of Ecdysozoa. Oxford University Press 2023-06-03 /pmc/articles/PMC10280001/ /pubmed/37279503 http://dx.doi.org/10.1093/gbe/evad103 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Genome Report
Lord, Arianna
Cunha, Tauana J
de Medeiros, Bruno A S
Sato, Shoyo
Khost, Danielle E
Sackton, Timothy B
Giribet, Gonzalo
Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola
title Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola
title_full Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola
title_fullStr Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola
title_full_unstemmed Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola
title_short Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola
title_sort expanding on our knowledge of ecdysozoan genomes: a contiguous assembly of the meiofaunal priapulan tubiluchus corallicola
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280001/
https://www.ncbi.nlm.nih.gov/pubmed/37279503
http://dx.doi.org/10.1093/gbe/evad103
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