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Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research
Research increasingly relies on interrogating large-scale data resources. The NIH National Heart, Lung, and Blood Institute developed the NHLBI BioData Catalyst(Ⓡ) (BDC), a community-driven ecosystem where researchers, including bench and clinical scientists, statisticians, and algorithm developers,...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280347/ https://www.ncbi.nlm.nih.gov/pubmed/37192819 http://dx.doi.org/10.1093/jamia/ocad048 |
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author | Ahalt, Stan Avillach, Paul Boyles, Rebecca Bradford, Kira Cox, Steven Davis-Dusenbery, Brandi Grossman, Robert L Krishnamurthy, Ashok Manning, Alisa Paten, Benedict Philippakis, Anthony Borecki, Ingrid Chen, Shu Hui Kaltman, Jon Ladwa, Sweta Schwartz, Chip Thomson, Alastair Davis, Sarah Leaf, Alison Lyons, Jessica Sheets, Elizabeth Bis, Joshua C Conomos, Matthew Culotti, Alessandro Desain, Thomas Digiovanna, Jack Domazet, Milan Gogarten, Stephanie Gutierrez-Sacristan, Alba Harris, Tim Heavner, Ben Jain, Deepti O'Connor, Brian Osborn, Kevin Pillion, Danielle Pleiness, Jacob Rice, Ken Rupp, Garrett Serret-Larmande, Arnaud Smith, Albert Stedman, Jason P Stilp, Adrienne Barsanti, Teresa Cheadle, John Erdmann, Christopher Farlow, Brandy Gartland-Gray, Allie Hayes, Julie Hiles, Hannah Kerr, Paul Lenhardt, Chris Madden, Tom Mieczkowska, Joanna O Miller, Amanda Patton, Patrick Rathbun, Marcie Suber, Stephanie Asare, Joe |
author_facet | Ahalt, Stan Avillach, Paul Boyles, Rebecca Bradford, Kira Cox, Steven Davis-Dusenbery, Brandi Grossman, Robert L Krishnamurthy, Ashok Manning, Alisa Paten, Benedict Philippakis, Anthony Borecki, Ingrid Chen, Shu Hui Kaltman, Jon Ladwa, Sweta Schwartz, Chip Thomson, Alastair Davis, Sarah Leaf, Alison Lyons, Jessica Sheets, Elizabeth Bis, Joshua C Conomos, Matthew Culotti, Alessandro Desain, Thomas Digiovanna, Jack Domazet, Milan Gogarten, Stephanie Gutierrez-Sacristan, Alba Harris, Tim Heavner, Ben Jain, Deepti O'Connor, Brian Osborn, Kevin Pillion, Danielle Pleiness, Jacob Rice, Ken Rupp, Garrett Serret-Larmande, Arnaud Smith, Albert Stedman, Jason P Stilp, Adrienne Barsanti, Teresa Cheadle, John Erdmann, Christopher Farlow, Brandy Gartland-Gray, Allie Hayes, Julie Hiles, Hannah Kerr, Paul Lenhardt, Chris Madden, Tom Mieczkowska, Joanna O Miller, Amanda Patton, Patrick Rathbun, Marcie Suber, Stephanie Asare, Joe |
author_sort | Ahalt, Stan |
collection | PubMed |
description | Research increasingly relies on interrogating large-scale data resources. The NIH National Heart, Lung, and Blood Institute developed the NHLBI BioData Catalyst(Ⓡ) (BDC), a community-driven ecosystem where researchers, including bench and clinical scientists, statisticians, and algorithm developers, find, access, share, store, and compute on large-scale datasets. This ecosystem provides secure, cloud-based workspaces, user authentication and authorization, search, tools and workflows, applications, and new innovative features to address community needs, including exploratory data analysis, genomic and imaging tools, tools for reproducibility, and improved interoperability with other NIH data science platforms. BDC offers straightforward access to large-scale datasets and computational resources that support precision medicine for heart, lung, blood, and sleep conditions, leveraging separately developed and managed platforms to maximize flexibility based on researcher needs, expertise, and backgrounds. Through the NHLBI BioData Catalyst Fellows Program, BDC facilitates scientific discoveries and technological advances. BDC also facilitated accelerated research on the coronavirus disease-2019 (COVID-19) pandemic. |
format | Online Article Text |
id | pubmed-10280347 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102803472023-06-21 Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research Ahalt, Stan Avillach, Paul Boyles, Rebecca Bradford, Kira Cox, Steven Davis-Dusenbery, Brandi Grossman, Robert L Krishnamurthy, Ashok Manning, Alisa Paten, Benedict Philippakis, Anthony Borecki, Ingrid Chen, Shu Hui Kaltman, Jon Ladwa, Sweta Schwartz, Chip Thomson, Alastair Davis, Sarah Leaf, Alison Lyons, Jessica Sheets, Elizabeth Bis, Joshua C Conomos, Matthew Culotti, Alessandro Desain, Thomas Digiovanna, Jack Domazet, Milan Gogarten, Stephanie Gutierrez-Sacristan, Alba Harris, Tim Heavner, Ben Jain, Deepti O'Connor, Brian Osborn, Kevin Pillion, Danielle Pleiness, Jacob Rice, Ken Rupp, Garrett Serret-Larmande, Arnaud Smith, Albert Stedman, Jason P Stilp, Adrienne Barsanti, Teresa Cheadle, John Erdmann, Christopher Farlow, Brandy Gartland-Gray, Allie Hayes, Julie Hiles, Hannah Kerr, Paul Lenhardt, Chris Madden, Tom Mieczkowska, Joanna O Miller, Amanda Patton, Patrick Rathbun, Marcie Suber, Stephanie Asare, Joe J Am Med Inform Assoc Brief Communication Research increasingly relies on interrogating large-scale data resources. The NIH National Heart, Lung, and Blood Institute developed the NHLBI BioData Catalyst(Ⓡ) (BDC), a community-driven ecosystem where researchers, including bench and clinical scientists, statisticians, and algorithm developers, find, access, share, store, and compute on large-scale datasets. This ecosystem provides secure, cloud-based workspaces, user authentication and authorization, search, tools and workflows, applications, and new innovative features to address community needs, including exploratory data analysis, genomic and imaging tools, tools for reproducibility, and improved interoperability with other NIH data science platforms. BDC offers straightforward access to large-scale datasets and computational resources that support precision medicine for heart, lung, blood, and sleep conditions, leveraging separately developed and managed platforms to maximize flexibility based on researcher needs, expertise, and backgrounds. Through the NHLBI BioData Catalyst Fellows Program, BDC facilitates scientific discoveries and technological advances. BDC also facilitated accelerated research on the coronavirus disease-2019 (COVID-19) pandemic. Oxford University Press 2023-05-16 /pmc/articles/PMC10280347/ /pubmed/37192819 http://dx.doi.org/10.1093/jamia/ocad048 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of the American Medical Informatics Association. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Brief Communication Ahalt, Stan Avillach, Paul Boyles, Rebecca Bradford, Kira Cox, Steven Davis-Dusenbery, Brandi Grossman, Robert L Krishnamurthy, Ashok Manning, Alisa Paten, Benedict Philippakis, Anthony Borecki, Ingrid Chen, Shu Hui Kaltman, Jon Ladwa, Sweta Schwartz, Chip Thomson, Alastair Davis, Sarah Leaf, Alison Lyons, Jessica Sheets, Elizabeth Bis, Joshua C Conomos, Matthew Culotti, Alessandro Desain, Thomas Digiovanna, Jack Domazet, Milan Gogarten, Stephanie Gutierrez-Sacristan, Alba Harris, Tim Heavner, Ben Jain, Deepti O'Connor, Brian Osborn, Kevin Pillion, Danielle Pleiness, Jacob Rice, Ken Rupp, Garrett Serret-Larmande, Arnaud Smith, Albert Stedman, Jason P Stilp, Adrienne Barsanti, Teresa Cheadle, John Erdmann, Christopher Farlow, Brandy Gartland-Gray, Allie Hayes, Julie Hiles, Hannah Kerr, Paul Lenhardt, Chris Madden, Tom Mieczkowska, Joanna O Miller, Amanda Patton, Patrick Rathbun, Marcie Suber, Stephanie Asare, Joe Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research |
title | Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research |
title_full | Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research |
title_fullStr | Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research |
title_full_unstemmed | Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research |
title_short | Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research |
title_sort | building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research |
topic | Brief Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280347/ https://www.ncbi.nlm.nih.gov/pubmed/37192819 http://dx.doi.org/10.1093/jamia/ocad048 |
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