Cargando…

Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research

Research increasingly relies on interrogating large-scale data resources. The NIH National Heart, Lung, and Blood Institute developed the NHLBI BioData Catalyst(Ⓡ) (BDC), a community-driven ecosystem where researchers, including bench and clinical scientists, statisticians, and algorithm developers,...

Descripción completa

Detalles Bibliográficos
Autores principales: Ahalt, Stan, Avillach, Paul, Boyles, Rebecca, Bradford, Kira, Cox, Steven, Davis-Dusenbery, Brandi, Grossman, Robert L, Krishnamurthy, Ashok, Manning, Alisa, Paten, Benedict, Philippakis, Anthony, Borecki, Ingrid, Chen, Shu Hui, Kaltman, Jon, Ladwa, Sweta, Schwartz, Chip, Thomson, Alastair, Davis, Sarah, Leaf, Alison, Lyons, Jessica, Sheets, Elizabeth, Bis, Joshua C, Conomos, Matthew, Culotti, Alessandro, Desain, Thomas, Digiovanna, Jack, Domazet, Milan, Gogarten, Stephanie, Gutierrez-Sacristan, Alba, Harris, Tim, Heavner, Ben, Jain, Deepti, O'Connor, Brian, Osborn, Kevin, Pillion, Danielle, Pleiness, Jacob, Rice, Ken, Rupp, Garrett, Serret-Larmande, Arnaud, Smith, Albert, Stedman, Jason P, Stilp, Adrienne, Barsanti, Teresa, Cheadle, John, Erdmann, Christopher, Farlow, Brandy, Gartland-Gray, Allie, Hayes, Julie, Hiles, Hannah, Kerr, Paul, Lenhardt, Chris, Madden, Tom, Mieczkowska, Joanna O, Miller, Amanda, Patton, Patrick, Rathbun, Marcie, Suber, Stephanie, Asare, Joe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280347/
https://www.ncbi.nlm.nih.gov/pubmed/37192819
http://dx.doi.org/10.1093/jamia/ocad048
_version_ 1785060776248082432
author Ahalt, Stan
Avillach, Paul
Boyles, Rebecca
Bradford, Kira
Cox, Steven
Davis-Dusenbery, Brandi
Grossman, Robert L
Krishnamurthy, Ashok
Manning, Alisa
Paten, Benedict
Philippakis, Anthony
Borecki, Ingrid
Chen, Shu Hui
Kaltman, Jon
Ladwa, Sweta
Schwartz, Chip
Thomson, Alastair
Davis, Sarah
Leaf, Alison
Lyons, Jessica
Sheets, Elizabeth
Bis, Joshua C
Conomos, Matthew
Culotti, Alessandro
Desain, Thomas
Digiovanna, Jack
Domazet, Milan
Gogarten, Stephanie
Gutierrez-Sacristan, Alba
Harris, Tim
Heavner, Ben
Jain, Deepti
O'Connor, Brian
Osborn, Kevin
Pillion, Danielle
Pleiness, Jacob
Rice, Ken
Rupp, Garrett
Serret-Larmande, Arnaud
Smith, Albert
Stedman, Jason P
Stilp, Adrienne
Barsanti, Teresa
Cheadle, John
Erdmann, Christopher
Farlow, Brandy
Gartland-Gray, Allie
Hayes, Julie
Hiles, Hannah
Kerr, Paul
Lenhardt, Chris
Madden, Tom
Mieczkowska, Joanna O
Miller, Amanda
Patton, Patrick
Rathbun, Marcie
Suber, Stephanie
Asare, Joe
author_facet Ahalt, Stan
Avillach, Paul
Boyles, Rebecca
Bradford, Kira
Cox, Steven
Davis-Dusenbery, Brandi
Grossman, Robert L
Krishnamurthy, Ashok
Manning, Alisa
Paten, Benedict
Philippakis, Anthony
Borecki, Ingrid
Chen, Shu Hui
Kaltman, Jon
Ladwa, Sweta
Schwartz, Chip
Thomson, Alastair
Davis, Sarah
Leaf, Alison
Lyons, Jessica
Sheets, Elizabeth
Bis, Joshua C
Conomos, Matthew
Culotti, Alessandro
Desain, Thomas
Digiovanna, Jack
Domazet, Milan
Gogarten, Stephanie
Gutierrez-Sacristan, Alba
Harris, Tim
Heavner, Ben
Jain, Deepti
O'Connor, Brian
Osborn, Kevin
Pillion, Danielle
Pleiness, Jacob
Rice, Ken
Rupp, Garrett
Serret-Larmande, Arnaud
Smith, Albert
Stedman, Jason P
Stilp, Adrienne
Barsanti, Teresa
Cheadle, John
Erdmann, Christopher
Farlow, Brandy
Gartland-Gray, Allie
Hayes, Julie
Hiles, Hannah
Kerr, Paul
Lenhardt, Chris
Madden, Tom
Mieczkowska, Joanna O
Miller, Amanda
Patton, Patrick
Rathbun, Marcie
Suber, Stephanie
Asare, Joe
author_sort Ahalt, Stan
collection PubMed
description Research increasingly relies on interrogating large-scale data resources. The NIH National Heart, Lung, and Blood Institute developed the NHLBI BioData Catalyst(Ⓡ) (BDC), a community-driven ecosystem where researchers, including bench and clinical scientists, statisticians, and algorithm developers, find, access, share, store, and compute on large-scale datasets. This ecosystem provides secure, cloud-based workspaces, user authentication and authorization, search, tools and workflows, applications, and new innovative features to address community needs, including exploratory data analysis, genomic and imaging tools, tools for reproducibility, and improved interoperability with other NIH data science platforms. BDC offers straightforward access to large-scale datasets and computational resources that support precision medicine for heart, lung, blood, and sleep conditions, leveraging separately developed and managed platforms to maximize flexibility based on researcher needs, expertise, and backgrounds. Through the NHLBI BioData Catalyst Fellows Program, BDC facilitates scientific discoveries and technological advances. BDC also facilitated accelerated research on the coronavirus disease-2019 (COVID-19) pandemic.
format Online
Article
Text
id pubmed-10280347
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-102803472023-06-21 Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research Ahalt, Stan Avillach, Paul Boyles, Rebecca Bradford, Kira Cox, Steven Davis-Dusenbery, Brandi Grossman, Robert L Krishnamurthy, Ashok Manning, Alisa Paten, Benedict Philippakis, Anthony Borecki, Ingrid Chen, Shu Hui Kaltman, Jon Ladwa, Sweta Schwartz, Chip Thomson, Alastair Davis, Sarah Leaf, Alison Lyons, Jessica Sheets, Elizabeth Bis, Joshua C Conomos, Matthew Culotti, Alessandro Desain, Thomas Digiovanna, Jack Domazet, Milan Gogarten, Stephanie Gutierrez-Sacristan, Alba Harris, Tim Heavner, Ben Jain, Deepti O'Connor, Brian Osborn, Kevin Pillion, Danielle Pleiness, Jacob Rice, Ken Rupp, Garrett Serret-Larmande, Arnaud Smith, Albert Stedman, Jason P Stilp, Adrienne Barsanti, Teresa Cheadle, John Erdmann, Christopher Farlow, Brandy Gartland-Gray, Allie Hayes, Julie Hiles, Hannah Kerr, Paul Lenhardt, Chris Madden, Tom Mieczkowska, Joanna O Miller, Amanda Patton, Patrick Rathbun, Marcie Suber, Stephanie Asare, Joe J Am Med Inform Assoc Brief Communication Research increasingly relies on interrogating large-scale data resources. The NIH National Heart, Lung, and Blood Institute developed the NHLBI BioData Catalyst(Ⓡ) (BDC), a community-driven ecosystem where researchers, including bench and clinical scientists, statisticians, and algorithm developers, find, access, share, store, and compute on large-scale datasets. This ecosystem provides secure, cloud-based workspaces, user authentication and authorization, search, tools and workflows, applications, and new innovative features to address community needs, including exploratory data analysis, genomic and imaging tools, tools for reproducibility, and improved interoperability with other NIH data science platforms. BDC offers straightforward access to large-scale datasets and computational resources that support precision medicine for heart, lung, blood, and sleep conditions, leveraging separately developed and managed platforms to maximize flexibility based on researcher needs, expertise, and backgrounds. Through the NHLBI BioData Catalyst Fellows Program, BDC facilitates scientific discoveries and technological advances. BDC also facilitated accelerated research on the coronavirus disease-2019 (COVID-19) pandemic. Oxford University Press 2023-05-16 /pmc/articles/PMC10280347/ /pubmed/37192819 http://dx.doi.org/10.1093/jamia/ocad048 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of the American Medical Informatics Association. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Brief Communication
Ahalt, Stan
Avillach, Paul
Boyles, Rebecca
Bradford, Kira
Cox, Steven
Davis-Dusenbery, Brandi
Grossman, Robert L
Krishnamurthy, Ashok
Manning, Alisa
Paten, Benedict
Philippakis, Anthony
Borecki, Ingrid
Chen, Shu Hui
Kaltman, Jon
Ladwa, Sweta
Schwartz, Chip
Thomson, Alastair
Davis, Sarah
Leaf, Alison
Lyons, Jessica
Sheets, Elizabeth
Bis, Joshua C
Conomos, Matthew
Culotti, Alessandro
Desain, Thomas
Digiovanna, Jack
Domazet, Milan
Gogarten, Stephanie
Gutierrez-Sacristan, Alba
Harris, Tim
Heavner, Ben
Jain, Deepti
O'Connor, Brian
Osborn, Kevin
Pillion, Danielle
Pleiness, Jacob
Rice, Ken
Rupp, Garrett
Serret-Larmande, Arnaud
Smith, Albert
Stedman, Jason P
Stilp, Adrienne
Barsanti, Teresa
Cheadle, John
Erdmann, Christopher
Farlow, Brandy
Gartland-Gray, Allie
Hayes, Julie
Hiles, Hannah
Kerr, Paul
Lenhardt, Chris
Madden, Tom
Mieczkowska, Joanna O
Miller, Amanda
Patton, Patrick
Rathbun, Marcie
Suber, Stephanie
Asare, Joe
Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research
title Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research
title_full Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research
title_fullStr Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research
title_full_unstemmed Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research
title_short Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research
title_sort building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research
topic Brief Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280347/
https://www.ncbi.nlm.nih.gov/pubmed/37192819
http://dx.doi.org/10.1093/jamia/ocad048
work_keys_str_mv AT ahaltstan buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT avillachpaul buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT boylesrebecca buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT bradfordkira buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT coxsteven buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT davisdusenberybrandi buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT grossmanrobertl buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT krishnamurthyashok buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT manningalisa buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT patenbenedict buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT philippakisanthony buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT boreckiingrid buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT chenshuhui buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT kaltmanjon buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT ladwasweta buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT schwartzchip buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT thomsonalastair buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT davissarah buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT leafalison buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT lyonsjessica buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT sheetselizabeth buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT bisjoshuac buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT conomosmatthew buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT culottialessandro buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT desainthomas buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT digiovannajack buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT domazetmilan buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT gogartenstephanie buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT gutierrezsacristanalba buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT harristim buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT heavnerben buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT jaindeepti buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT oconnorbrian buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT osbornkevin buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT pilliondanielle buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT pleinessjacob buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT riceken buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT ruppgarrett buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT serretlarmandearnaud buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT smithalbert buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT stedmanjasonp buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT stilpadrienne buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT barsantiteresa buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT cheadlejohn buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT erdmannchristopher buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT farlowbrandy buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT gartlandgrayallie buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT hayesjulie buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT hileshannah buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT kerrpaul buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT lenhardtchris buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT maddentom buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT mieczkowskajoannao buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT milleramanda buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT pattonpatrick buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT rathbunmarcie buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT suberstephanie buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch
AT asarejoe buildingacollaborativecloudplatformtoaccelerateheartlungbloodandsleepresearch