Cargando…

Augmenting healthy brain magnetic resonance images using generative adversarial networks

Machine learning applications in the medical sector face a lack of medical data due to privacy issues. For instance, brain tumor image-based classification suffers from the lack of brain images. The lack of such images produces some classification problems, i.e., class imbalance issues which can cau...

Descripción completa

Detalles Bibliográficos
Autores principales: Alrumiah, Sarah S., Alrebdi, Norah, Ibrahim, Dina M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280481/
https://www.ncbi.nlm.nih.gov/pubmed/37346635
http://dx.doi.org/10.7717/peerj-cs.1318
_version_ 1785060803240525824
author Alrumiah, Sarah S.
Alrebdi, Norah
Ibrahim, Dina M.
author_facet Alrumiah, Sarah S.
Alrebdi, Norah
Ibrahim, Dina M.
author_sort Alrumiah, Sarah S.
collection PubMed
description Machine learning applications in the medical sector face a lack of medical data due to privacy issues. For instance, brain tumor image-based classification suffers from the lack of brain images. The lack of such images produces some classification problems, i.e., class imbalance issues which can cause a bias toward one class over the others. This study aims to solve the imbalance problem of the “no tumor” class in the publicly available brain magnetic resonance imaging (MRI) dataset. Generative adversarial network (GAN)-based augmentation techniques were used to solve the imbalance classification problem. Specifically, deep convolutional GAN (DCGAN) and single GAN (SinGAN). Moreover, the traditional-based augmentation techniques were implemented using the rotation method. Thus, several VGG16 classification experiments were conducted, including (i) the original dataset, (ii) the DCGAN-based dataset, (iii) the SinGAN-based dataset, (iv) a combination of the DCGAN and SinGAN dataset, and (v) the rotation-based dataset. However, the results show that the original dataset achieved the highest accuracy, 73%. Additionally, SinGAN outperformed DCGAN by a significant margin of 4%. In contrast, experimenting with the non-augmented original dataset resulted in the highest classification loss value, which explains the effect of the imbalance issue. These results provide a general view of the effect of different image augmentation techniques on enlarging the healthy brain dataset.
format Online
Article
Text
id pubmed-10280481
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher PeerJ Inc.
record_format MEDLINE/PubMed
spelling pubmed-102804812023-06-21 Augmenting healthy brain magnetic resonance images using generative adversarial networks Alrumiah, Sarah S. Alrebdi, Norah Ibrahim, Dina M. PeerJ Comput Sci Bioinformatics Machine learning applications in the medical sector face a lack of medical data due to privacy issues. For instance, brain tumor image-based classification suffers from the lack of brain images. The lack of such images produces some classification problems, i.e., class imbalance issues which can cause a bias toward one class over the others. This study aims to solve the imbalance problem of the “no tumor” class in the publicly available brain magnetic resonance imaging (MRI) dataset. Generative adversarial network (GAN)-based augmentation techniques were used to solve the imbalance classification problem. Specifically, deep convolutional GAN (DCGAN) and single GAN (SinGAN). Moreover, the traditional-based augmentation techniques were implemented using the rotation method. Thus, several VGG16 classification experiments were conducted, including (i) the original dataset, (ii) the DCGAN-based dataset, (iii) the SinGAN-based dataset, (iv) a combination of the DCGAN and SinGAN dataset, and (v) the rotation-based dataset. However, the results show that the original dataset achieved the highest accuracy, 73%. Additionally, SinGAN outperformed DCGAN by a significant margin of 4%. In contrast, experimenting with the non-augmented original dataset resulted in the highest classification loss value, which explains the effect of the imbalance issue. These results provide a general view of the effect of different image augmentation techniques on enlarging the healthy brain dataset. PeerJ Inc. 2023-04-11 /pmc/articles/PMC10280481/ /pubmed/37346635 http://dx.doi.org/10.7717/peerj-cs.1318 Text en ©2023 Alrumiah et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Alrumiah, Sarah S.
Alrebdi, Norah
Ibrahim, Dina M.
Augmenting healthy brain magnetic resonance images using generative adversarial networks
title Augmenting healthy brain magnetic resonance images using generative adversarial networks
title_full Augmenting healthy brain magnetic resonance images using generative adversarial networks
title_fullStr Augmenting healthy brain magnetic resonance images using generative adversarial networks
title_full_unstemmed Augmenting healthy brain magnetic resonance images using generative adversarial networks
title_short Augmenting healthy brain magnetic resonance images using generative adversarial networks
title_sort augmenting healthy brain magnetic resonance images using generative adversarial networks
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280481/
https://www.ncbi.nlm.nih.gov/pubmed/37346635
http://dx.doi.org/10.7717/peerj-cs.1318
work_keys_str_mv AT alrumiahsarahs augmentinghealthybrainmagneticresonanceimagesusinggenerativeadversarialnetworks
AT alrebdinorah augmentinghealthybrainmagneticresonanceimagesusinggenerativeadversarialnetworks
AT ibrahimdinam augmentinghealthybrainmagneticresonanceimagesusinggenerativeadversarialnetworks