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Augmenting healthy brain magnetic resonance images using generative adversarial networks
Machine learning applications in the medical sector face a lack of medical data due to privacy issues. For instance, brain tumor image-based classification suffers from the lack of brain images. The lack of such images produces some classification problems, i.e., class imbalance issues which can cau...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280481/ https://www.ncbi.nlm.nih.gov/pubmed/37346635 http://dx.doi.org/10.7717/peerj-cs.1318 |
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author | Alrumiah, Sarah S. Alrebdi, Norah Ibrahim, Dina M. |
author_facet | Alrumiah, Sarah S. Alrebdi, Norah Ibrahim, Dina M. |
author_sort | Alrumiah, Sarah S. |
collection | PubMed |
description | Machine learning applications in the medical sector face a lack of medical data due to privacy issues. For instance, brain tumor image-based classification suffers from the lack of brain images. The lack of such images produces some classification problems, i.e., class imbalance issues which can cause a bias toward one class over the others. This study aims to solve the imbalance problem of the “no tumor” class in the publicly available brain magnetic resonance imaging (MRI) dataset. Generative adversarial network (GAN)-based augmentation techniques were used to solve the imbalance classification problem. Specifically, deep convolutional GAN (DCGAN) and single GAN (SinGAN). Moreover, the traditional-based augmentation techniques were implemented using the rotation method. Thus, several VGG16 classification experiments were conducted, including (i) the original dataset, (ii) the DCGAN-based dataset, (iii) the SinGAN-based dataset, (iv) a combination of the DCGAN and SinGAN dataset, and (v) the rotation-based dataset. However, the results show that the original dataset achieved the highest accuracy, 73%. Additionally, SinGAN outperformed DCGAN by a significant margin of 4%. In contrast, experimenting with the non-augmented original dataset resulted in the highest classification loss value, which explains the effect of the imbalance issue. These results provide a general view of the effect of different image augmentation techniques on enlarging the healthy brain dataset. |
format | Online Article Text |
id | pubmed-10280481 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102804812023-06-21 Augmenting healthy brain magnetic resonance images using generative adversarial networks Alrumiah, Sarah S. Alrebdi, Norah Ibrahim, Dina M. PeerJ Comput Sci Bioinformatics Machine learning applications in the medical sector face a lack of medical data due to privacy issues. For instance, brain tumor image-based classification suffers from the lack of brain images. The lack of such images produces some classification problems, i.e., class imbalance issues which can cause a bias toward one class over the others. This study aims to solve the imbalance problem of the “no tumor” class in the publicly available brain magnetic resonance imaging (MRI) dataset. Generative adversarial network (GAN)-based augmentation techniques were used to solve the imbalance classification problem. Specifically, deep convolutional GAN (DCGAN) and single GAN (SinGAN). Moreover, the traditional-based augmentation techniques were implemented using the rotation method. Thus, several VGG16 classification experiments were conducted, including (i) the original dataset, (ii) the DCGAN-based dataset, (iii) the SinGAN-based dataset, (iv) a combination of the DCGAN and SinGAN dataset, and (v) the rotation-based dataset. However, the results show that the original dataset achieved the highest accuracy, 73%. Additionally, SinGAN outperformed DCGAN by a significant margin of 4%. In contrast, experimenting with the non-augmented original dataset resulted in the highest classification loss value, which explains the effect of the imbalance issue. These results provide a general view of the effect of different image augmentation techniques on enlarging the healthy brain dataset. PeerJ Inc. 2023-04-11 /pmc/articles/PMC10280481/ /pubmed/37346635 http://dx.doi.org/10.7717/peerj-cs.1318 Text en ©2023 Alrumiah et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Alrumiah, Sarah S. Alrebdi, Norah Ibrahim, Dina M. Augmenting healthy brain magnetic resonance images using generative adversarial networks |
title | Augmenting healthy brain magnetic resonance images using generative adversarial networks |
title_full | Augmenting healthy brain magnetic resonance images using generative adversarial networks |
title_fullStr | Augmenting healthy brain magnetic resonance images using generative adversarial networks |
title_full_unstemmed | Augmenting healthy brain magnetic resonance images using generative adversarial networks |
title_short | Augmenting healthy brain magnetic resonance images using generative adversarial networks |
title_sort | augmenting healthy brain magnetic resonance images using generative adversarial networks |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280481/ https://www.ncbi.nlm.nih.gov/pubmed/37346635 http://dx.doi.org/10.7717/peerj-cs.1318 |
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