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Classification of basal stem rot using deep learning: a review of digital data collection and palm disease classification methods

Oil palm is a key agricultural resource in Malaysia. However, palm disease, most prominently basal stem rot caused at least RM 255 million of annual economic loss. Basal stem rot is caused by a fungus known as Ganoderma boninense. An infected tree shows few symptoms during early stage of infection,...

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Autores principales: Haw, Yu Hong, Lai, Khin Wee, Chuah, Joon Huang, Bejo, Siti Khairunniza, Husin, Nur Azuan, Hum, Yan Chai, Yee, Por Lip, Tee, Clarence Augustine T. H., Ye, Xin, Wu, Xiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280561/
https://www.ncbi.nlm.nih.gov/pubmed/37346512
http://dx.doi.org/10.7717/peerj-cs.1325
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author Haw, Yu Hong
Lai, Khin Wee
Chuah, Joon Huang
Bejo, Siti Khairunniza
Husin, Nur Azuan
Hum, Yan Chai
Yee, Por Lip
Tee, Clarence Augustine T. H.
Ye, Xin
Wu, Xiang
author_facet Haw, Yu Hong
Lai, Khin Wee
Chuah, Joon Huang
Bejo, Siti Khairunniza
Husin, Nur Azuan
Hum, Yan Chai
Yee, Por Lip
Tee, Clarence Augustine T. H.
Ye, Xin
Wu, Xiang
author_sort Haw, Yu Hong
collection PubMed
description Oil palm is a key agricultural resource in Malaysia. However, palm disease, most prominently basal stem rot caused at least RM 255 million of annual economic loss. Basal stem rot is caused by a fungus known as Ganoderma boninense. An infected tree shows few symptoms during early stage of infection, while potentially suffers an 80% lifetime yield loss and the tree may be dead within 2 years. Early detection of basal stem rot is crucial since disease control efforts can be done. Laboratory BSR detection methods are effective, but the methods have accuracy, biosafety, and cost concerns. This review article consists of scientific articles related to the oil palm tree disease, basal stem rot, Ganoderma Boninense, remote sensors and deep learning that are listed in the Web of Science since year 2012. About 110 scientific articles were found that is related to the index terms mentioned and 60 research articles were found to be related to the objective of this research thus included in this review article. From the review, it was found that the potential use of deep learning methods were rarely explored. Some research showed unsatisfactory results due to limitations on dataset. However, based on studies related to other plant diseases, deep learning in combination with data augmentation techniques showed great potentials, showing remarkable detection accuracy. Therefore, the feasibility of analyzing oil palm remote sensor data using deep learning models together with data augmentation techniques should be studied. On a commercial scale, deep learning used together with remote sensors and unmanned aerial vehicle technologies showed great potential in the detection of basal stem rot disease.
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spelling pubmed-102805612023-06-21 Classification of basal stem rot using deep learning: a review of digital data collection and palm disease classification methods Haw, Yu Hong Lai, Khin Wee Chuah, Joon Huang Bejo, Siti Khairunniza Husin, Nur Azuan Hum, Yan Chai Yee, Por Lip Tee, Clarence Augustine T. H. Ye, Xin Wu, Xiang PeerJ Comput Sci Bioinformatics Oil palm is a key agricultural resource in Malaysia. However, palm disease, most prominently basal stem rot caused at least RM 255 million of annual economic loss. Basal stem rot is caused by a fungus known as Ganoderma boninense. An infected tree shows few symptoms during early stage of infection, while potentially suffers an 80% lifetime yield loss and the tree may be dead within 2 years. Early detection of basal stem rot is crucial since disease control efforts can be done. Laboratory BSR detection methods are effective, but the methods have accuracy, biosafety, and cost concerns. This review article consists of scientific articles related to the oil palm tree disease, basal stem rot, Ganoderma Boninense, remote sensors and deep learning that are listed in the Web of Science since year 2012. About 110 scientific articles were found that is related to the index terms mentioned and 60 research articles were found to be related to the objective of this research thus included in this review article. From the review, it was found that the potential use of deep learning methods were rarely explored. Some research showed unsatisfactory results due to limitations on dataset. However, based on studies related to other plant diseases, deep learning in combination with data augmentation techniques showed great potentials, showing remarkable detection accuracy. Therefore, the feasibility of analyzing oil palm remote sensor data using deep learning models together with data augmentation techniques should be studied. On a commercial scale, deep learning used together with remote sensors and unmanned aerial vehicle technologies showed great potential in the detection of basal stem rot disease. PeerJ Inc. 2023-04-17 /pmc/articles/PMC10280561/ /pubmed/37346512 http://dx.doi.org/10.7717/peerj-cs.1325 Text en © 2023 Haw et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Haw, Yu Hong
Lai, Khin Wee
Chuah, Joon Huang
Bejo, Siti Khairunniza
Husin, Nur Azuan
Hum, Yan Chai
Yee, Por Lip
Tee, Clarence Augustine T. H.
Ye, Xin
Wu, Xiang
Classification of basal stem rot using deep learning: a review of digital data collection and palm disease classification methods
title Classification of basal stem rot using deep learning: a review of digital data collection and palm disease classification methods
title_full Classification of basal stem rot using deep learning: a review of digital data collection and palm disease classification methods
title_fullStr Classification of basal stem rot using deep learning: a review of digital data collection and palm disease classification methods
title_full_unstemmed Classification of basal stem rot using deep learning: a review of digital data collection and palm disease classification methods
title_short Classification of basal stem rot using deep learning: a review of digital data collection and palm disease classification methods
title_sort classification of basal stem rot using deep learning: a review of digital data collection and palm disease classification methods
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280561/
https://www.ncbi.nlm.nih.gov/pubmed/37346512
http://dx.doi.org/10.7717/peerj-cs.1325
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