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Global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes
Barley yellow dwarf virus (BYDV) has caused considerable losses in the global production of grain crops such as wheat, barley and maize. We investigated the phylodynamics of the virus by analysing 379 and 485 nucleotide sequences of the genes encoding the coat protein and movement protein, respectiv...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280855/ https://www.ncbi.nlm.nih.gov/pubmed/37340422 http://dx.doi.org/10.1186/s12985-023-02084-1 |
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author | Wei, Shiqing Chen, Guoliang Yang, Hui Huang, Liang Gong, Guoshu Luo, PeiGao Zhang, Min |
author_facet | Wei, Shiqing Chen, Guoliang Yang, Hui Huang, Liang Gong, Guoshu Luo, PeiGao Zhang, Min |
author_sort | Wei, Shiqing |
collection | PubMed |
description | Barley yellow dwarf virus (BYDV) has caused considerable losses in the global production of grain crops such as wheat, barley and maize. We investigated the phylodynamics of the virus by analysing 379 and 485 nucleotide sequences of the genes encoding the coat protein and movement protein, respectively. The maximum clade credibility tree indicated that BYDV-GAV and BYDV-MAV, BYDV-PAV and BYDV-PAS share the same evolutionary lineage, respectively. The diversification of BYDV arises from its adaptability to vector insects and geography. Bayesian phylogenetic analyses showed that the mean substitution rates of the coat and movement proteins of BYDV ranged from 8.327 × 10(− 4) (4.700 × 10(− 4)–1.228 × 10(− 3)) and 8.671 × 10(− 4) (6.143 × 10(− 4)–1.130 × 10(− 3)) substitutions/site/year, respectively. The time since the most recent common BYDV ancestor was 1434 (1040–1766) CE (Common Era). The Bayesian skyline plot (BSP) showed that the BYDV population experienced dramatic expansions approximately 8 years into the 21st century, followed by a dramatic decline in less than 15 years. Our phylogeographic analysis showed that the BYDV population originating in the United States was subsequently introduced to Europe, South America, Australia and Asia. The migration pathways of BYDV suggest that the global spread of BYDV is associated with human activities. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12985-023-02084-1. |
format | Online Article Text |
id | pubmed-10280855 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-102808552023-06-21 Global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes Wei, Shiqing Chen, Guoliang Yang, Hui Huang, Liang Gong, Guoshu Luo, PeiGao Zhang, Min Virol J Research Barley yellow dwarf virus (BYDV) has caused considerable losses in the global production of grain crops such as wheat, barley and maize. We investigated the phylodynamics of the virus by analysing 379 and 485 nucleotide sequences of the genes encoding the coat protein and movement protein, respectively. The maximum clade credibility tree indicated that BYDV-GAV and BYDV-MAV, BYDV-PAV and BYDV-PAS share the same evolutionary lineage, respectively. The diversification of BYDV arises from its adaptability to vector insects and geography. Bayesian phylogenetic analyses showed that the mean substitution rates of the coat and movement proteins of BYDV ranged from 8.327 × 10(− 4) (4.700 × 10(− 4)–1.228 × 10(− 3)) and 8.671 × 10(− 4) (6.143 × 10(− 4)–1.130 × 10(− 3)) substitutions/site/year, respectively. The time since the most recent common BYDV ancestor was 1434 (1040–1766) CE (Common Era). The Bayesian skyline plot (BSP) showed that the BYDV population experienced dramatic expansions approximately 8 years into the 21st century, followed by a dramatic decline in less than 15 years. Our phylogeographic analysis showed that the BYDV population originating in the United States was subsequently introduced to Europe, South America, Australia and Asia. The migration pathways of BYDV suggest that the global spread of BYDV is associated with human activities. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12985-023-02084-1. BioMed Central 2023-06-20 /pmc/articles/PMC10280855/ /pubmed/37340422 http://dx.doi.org/10.1186/s12985-023-02084-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Wei, Shiqing Chen, Guoliang Yang, Hui Huang, Liang Gong, Guoshu Luo, PeiGao Zhang, Min Global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes |
title | Global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes |
title_full | Global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes |
title_fullStr | Global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes |
title_full_unstemmed | Global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes |
title_short | Global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes |
title_sort | global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10280855/ https://www.ncbi.nlm.nih.gov/pubmed/37340422 http://dx.doi.org/10.1186/s12985-023-02084-1 |
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