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Multicenter Evaluation of the BIOFIRE Blood Culture Identification 2 Panel for Detection of Bacteria, Yeasts, and Antimicrobial Resistance Genes in Positive Blood Culture Samples
Diagnostic tools that can rapidly identify and characterize microbes growing in blood cultures are important components of clinical microbiology practice because they help to provide timely information that can be used to optimize patient management. This publication describes the bioMérieux BIOFIRE...
Autores principales: | , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society for Microbiology
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10281132/ https://www.ncbi.nlm.nih.gov/pubmed/37227281 http://dx.doi.org/10.1128/jcm.01891-22 |
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author | Rhoads, Daniel D. Pournaras, Spyros Leber, Amy Balada-Llasat, Joan-Miquel Harrington, Amanda Sambri, Vittorio She, Rosemary Berry, Gregory J. Daly, Judy Good, Caryn Tarpatzi, Aikaterini Everhart, Kathy Henry, Tai McKinley, Kathleen Zannoli, Silvia Pak, Pil Zhang, Fan Barr, Rebecca Holmberg, Kristen Kensinger, Bart Lu, Daisy Y. |
author_facet | Rhoads, Daniel D. Pournaras, Spyros Leber, Amy Balada-Llasat, Joan-Miquel Harrington, Amanda Sambri, Vittorio She, Rosemary Berry, Gregory J. Daly, Judy Good, Caryn Tarpatzi, Aikaterini Everhart, Kathy Henry, Tai McKinley, Kathleen Zannoli, Silvia Pak, Pil Zhang, Fan Barr, Rebecca Holmberg, Kristen Kensinger, Bart Lu, Daisy Y. |
author_sort | Rhoads, Daniel D. |
collection | PubMed |
description | Diagnostic tools that can rapidly identify and characterize microbes growing in blood cultures are important components of clinical microbiology practice because they help to provide timely information that can be used to optimize patient management. This publication describes the bioMérieux BIOFIRE Blood Culture Identification 2 (BCID2) Panel clinical study that was submitted to the U.S. Food & Drug Administration. Results obtained with the BIOFIRE BCID2 Panel were compared to standard-of-care (SoC) results, sequencing results, PCR results, and reference laboratory antimicrobial susceptibility testing results to evaluate the accuracy of its performance. Results for 1,093 retrospectively and prospectively collected positive blood culture samples were initially enrolled, and 1,074 samples met the study criteria and were included in the final analyses. The BIOFIRE BCID2 Panel demonstrated an overall sensitivity of 98.9% (1,712/1,731) and an overall specificity of 99.6% (33,592/33,711) for Gram-positive bacteria, Gram-negative bacteria and yeast targets which the panel is designed to detect. One hundred eighteen off-panel organisms, which the BIOFIRE BCID2 Panel is not designed to detect, were identified by SoC in 10.6% (114/1,074) of samples. The BIOFIRE BCID2 Panel also demonstrated an overall positive percent agreement (PPA) of 97.9% (325/332) and an overall negative percent agreement (NPA) of 99.9% (2,465/2,767) for antimicrobial resistance determinants which the panel is designed to detect. The presence or absence of resistance markers in Enterobacterales correlated closely with phenotypic susceptibility and resistance. We conclude that the BIOFIRE BCID2 Panel produced accurate results in this clinical trial. |
format | Online Article Text |
id | pubmed-10281132 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Society for Microbiology |
record_format | MEDLINE/PubMed |
spelling | pubmed-102811322023-06-21 Multicenter Evaluation of the BIOFIRE Blood Culture Identification 2 Panel for Detection of Bacteria, Yeasts, and Antimicrobial Resistance Genes in Positive Blood Culture Samples Rhoads, Daniel D. Pournaras, Spyros Leber, Amy Balada-Llasat, Joan-Miquel Harrington, Amanda Sambri, Vittorio She, Rosemary Berry, Gregory J. Daly, Judy Good, Caryn Tarpatzi, Aikaterini Everhart, Kathy Henry, Tai McKinley, Kathleen Zannoli, Silvia Pak, Pil Zhang, Fan Barr, Rebecca Holmberg, Kristen Kensinger, Bart Lu, Daisy Y. J Clin Microbiol Bacteriology Diagnostic tools that can rapidly identify and characterize microbes growing in blood cultures are important components of clinical microbiology practice because they help to provide timely information that can be used to optimize patient management. This publication describes the bioMérieux BIOFIRE Blood Culture Identification 2 (BCID2) Panel clinical study that was submitted to the U.S. Food & Drug Administration. Results obtained with the BIOFIRE BCID2 Panel were compared to standard-of-care (SoC) results, sequencing results, PCR results, and reference laboratory antimicrobial susceptibility testing results to evaluate the accuracy of its performance. Results for 1,093 retrospectively and prospectively collected positive blood culture samples were initially enrolled, and 1,074 samples met the study criteria and were included in the final analyses. The BIOFIRE BCID2 Panel demonstrated an overall sensitivity of 98.9% (1,712/1,731) and an overall specificity of 99.6% (33,592/33,711) for Gram-positive bacteria, Gram-negative bacteria and yeast targets which the panel is designed to detect. One hundred eighteen off-panel organisms, which the BIOFIRE BCID2 Panel is not designed to detect, were identified by SoC in 10.6% (114/1,074) of samples. The BIOFIRE BCID2 Panel also demonstrated an overall positive percent agreement (PPA) of 97.9% (325/332) and an overall negative percent agreement (NPA) of 99.9% (2,465/2,767) for antimicrobial resistance determinants which the panel is designed to detect. The presence or absence of resistance markers in Enterobacterales correlated closely with phenotypic susceptibility and resistance. We conclude that the BIOFIRE BCID2 Panel produced accurate results in this clinical trial. American Society for Microbiology 2023-05-25 /pmc/articles/PMC10281132/ /pubmed/37227281 http://dx.doi.org/10.1128/jcm.01891-22 Text en Copyright © 2023 Rhoads et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Bacteriology Rhoads, Daniel D. Pournaras, Spyros Leber, Amy Balada-Llasat, Joan-Miquel Harrington, Amanda Sambri, Vittorio She, Rosemary Berry, Gregory J. Daly, Judy Good, Caryn Tarpatzi, Aikaterini Everhart, Kathy Henry, Tai McKinley, Kathleen Zannoli, Silvia Pak, Pil Zhang, Fan Barr, Rebecca Holmberg, Kristen Kensinger, Bart Lu, Daisy Y. Multicenter Evaluation of the BIOFIRE Blood Culture Identification 2 Panel for Detection of Bacteria, Yeasts, and Antimicrobial Resistance Genes in Positive Blood Culture Samples |
title | Multicenter Evaluation of the BIOFIRE Blood Culture Identification 2 Panel for Detection of Bacteria, Yeasts, and Antimicrobial Resistance Genes in Positive Blood Culture Samples |
title_full | Multicenter Evaluation of the BIOFIRE Blood Culture Identification 2 Panel for Detection of Bacteria, Yeasts, and Antimicrobial Resistance Genes in Positive Blood Culture Samples |
title_fullStr | Multicenter Evaluation of the BIOFIRE Blood Culture Identification 2 Panel for Detection of Bacteria, Yeasts, and Antimicrobial Resistance Genes in Positive Blood Culture Samples |
title_full_unstemmed | Multicenter Evaluation of the BIOFIRE Blood Culture Identification 2 Panel for Detection of Bacteria, Yeasts, and Antimicrobial Resistance Genes in Positive Blood Culture Samples |
title_short | Multicenter Evaluation of the BIOFIRE Blood Culture Identification 2 Panel for Detection of Bacteria, Yeasts, and Antimicrobial Resistance Genes in Positive Blood Culture Samples |
title_sort | multicenter evaluation of the biofire blood culture identification 2 panel for detection of bacteria, yeasts, and antimicrobial resistance genes in positive blood culture samples |
topic | Bacteriology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10281132/ https://www.ncbi.nlm.nih.gov/pubmed/37227281 http://dx.doi.org/10.1128/jcm.01891-22 |
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