Cargando…

Vasculogenic mimicry score identifies the prognosis and immune landscape of lung adenocarcinoma

Background: Lung cancer has a high incidence and mortality rate worldwide. Vasculogenic mimicry (VM) is a specific modality of tumor angiogenesis that could potentially be a new target for tumor therapy. The purpose of this study was to explore the role of VM-related genes in assessing the prognosis...

Descripción completa

Detalles Bibliográficos
Autores principales: Yang, Weichang, Li, Zhouhua, Wang, Wenjun, Wu, Juan, Li, Jinbo, Huang, Xiaotian, Zhang, Xinyi, Ye, Xiaoqun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10282128/
https://www.ncbi.nlm.nih.gov/pubmed/37351348
http://dx.doi.org/10.3389/fgene.2023.1206141
_version_ 1785061129359196160
author Yang, Weichang
Li, Zhouhua
Wang, Wenjun
Wu, Juan
Li, Jinbo
Huang, Xiaotian
Zhang, Xinyi
Ye, Xiaoqun
author_facet Yang, Weichang
Li, Zhouhua
Wang, Wenjun
Wu, Juan
Li, Jinbo
Huang, Xiaotian
Zhang, Xinyi
Ye, Xiaoqun
author_sort Yang, Weichang
collection PubMed
description Background: Lung cancer has a high incidence and mortality rate worldwide. Vasculogenic mimicry (VM) is a specific modality of tumor angiogenesis that could potentially be a new target for tumor therapy. The purpose of this study was to explore the role of VM-related genes in assessing the prognosis and immune landscape of lung cancer. Methods: VM-related genes were obtained from previous studies, and the expression data and clinical data of lung adenocarcinoma (LUAD) patients were obtained from the TCGA database and GEO database. We performed enrichment analysis of 24 VM-related genes and screened hub genes by constructing a protein–protein interaction network and using Cytoscape software. Subsequently, we developed the VM score based on univariate Cox regression analysis and Lasso analysis and validated the VM score on the GSE72094 dataset. In addition, we constructed a nomogram based on the VM score in the TCGA cohort. Finally, we explored the correlation between the VM score and the tumor microenvironment, immune cell infiltration, immune checkpoints, and drug sensitivity. Results: Enrichment analysis revealed that VM-related genes were associated with the HIF signaling pathway and angiogenic pathway. We developed a VM score based on 3 genes (EPHA2, LAMC2 and LOXL2) in LUAD patients. Kaplan-Meier analysis showed that the VM score was associated with poor prognosis in LUAD patients. The receiver operating characteristic curve suggested that the VM score and nomogram are valid predictors for the overall survival of LUAD patients. The VM score was significantly correlated with immune cell infiltration, such as naïve B cells, neutrophils, and eosinophils, and there was a difference in the TME between the high VM score group and the low VM score group. LUAD patients in the high VM score group were more sensitive to antitumor drugs. Conclusion: In summary, the VM score developed in this study is a valuable indicator for evaluating the prognosis and immune landscape of LUAD patients. VM may be a potential target for antitumor therapy in lung cancer.
format Online
Article
Text
id pubmed-10282128
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-102821282023-06-22 Vasculogenic mimicry score identifies the prognosis and immune landscape of lung adenocarcinoma Yang, Weichang Li, Zhouhua Wang, Wenjun Wu, Juan Li, Jinbo Huang, Xiaotian Zhang, Xinyi Ye, Xiaoqun Front Genet Genetics Background: Lung cancer has a high incidence and mortality rate worldwide. Vasculogenic mimicry (VM) is a specific modality of tumor angiogenesis that could potentially be a new target for tumor therapy. The purpose of this study was to explore the role of VM-related genes in assessing the prognosis and immune landscape of lung cancer. Methods: VM-related genes were obtained from previous studies, and the expression data and clinical data of lung adenocarcinoma (LUAD) patients were obtained from the TCGA database and GEO database. We performed enrichment analysis of 24 VM-related genes and screened hub genes by constructing a protein–protein interaction network and using Cytoscape software. Subsequently, we developed the VM score based on univariate Cox regression analysis and Lasso analysis and validated the VM score on the GSE72094 dataset. In addition, we constructed a nomogram based on the VM score in the TCGA cohort. Finally, we explored the correlation between the VM score and the tumor microenvironment, immune cell infiltration, immune checkpoints, and drug sensitivity. Results: Enrichment analysis revealed that VM-related genes were associated with the HIF signaling pathway and angiogenic pathway. We developed a VM score based on 3 genes (EPHA2, LAMC2 and LOXL2) in LUAD patients. Kaplan-Meier analysis showed that the VM score was associated with poor prognosis in LUAD patients. The receiver operating characteristic curve suggested that the VM score and nomogram are valid predictors for the overall survival of LUAD patients. The VM score was significantly correlated with immune cell infiltration, such as naïve B cells, neutrophils, and eosinophils, and there was a difference in the TME between the high VM score group and the low VM score group. LUAD patients in the high VM score group were more sensitive to antitumor drugs. Conclusion: In summary, the VM score developed in this study is a valuable indicator for evaluating the prognosis and immune landscape of LUAD patients. VM may be a potential target for antitumor therapy in lung cancer. Frontiers Media S.A. 2023-06-07 /pmc/articles/PMC10282128/ /pubmed/37351348 http://dx.doi.org/10.3389/fgene.2023.1206141 Text en Copyright © 2023 Yang, Li, Wang, Wu, Li, Huang, Zhang and Ye. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Yang, Weichang
Li, Zhouhua
Wang, Wenjun
Wu, Juan
Li, Jinbo
Huang, Xiaotian
Zhang, Xinyi
Ye, Xiaoqun
Vasculogenic mimicry score identifies the prognosis and immune landscape of lung adenocarcinoma
title Vasculogenic mimicry score identifies the prognosis and immune landscape of lung adenocarcinoma
title_full Vasculogenic mimicry score identifies the prognosis and immune landscape of lung adenocarcinoma
title_fullStr Vasculogenic mimicry score identifies the prognosis and immune landscape of lung adenocarcinoma
title_full_unstemmed Vasculogenic mimicry score identifies the prognosis and immune landscape of lung adenocarcinoma
title_short Vasculogenic mimicry score identifies the prognosis and immune landscape of lung adenocarcinoma
title_sort vasculogenic mimicry score identifies the prognosis and immune landscape of lung adenocarcinoma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10282128/
https://www.ncbi.nlm.nih.gov/pubmed/37351348
http://dx.doi.org/10.3389/fgene.2023.1206141
work_keys_str_mv AT yangweichang vasculogenicmimicryscoreidentifiestheprognosisandimmunelandscapeoflungadenocarcinoma
AT lizhouhua vasculogenicmimicryscoreidentifiestheprognosisandimmunelandscapeoflungadenocarcinoma
AT wangwenjun vasculogenicmimicryscoreidentifiestheprognosisandimmunelandscapeoflungadenocarcinoma
AT wujuan vasculogenicmimicryscoreidentifiestheprognosisandimmunelandscapeoflungadenocarcinoma
AT lijinbo vasculogenicmimicryscoreidentifiestheprognosisandimmunelandscapeoflungadenocarcinoma
AT huangxiaotian vasculogenicmimicryscoreidentifiestheprognosisandimmunelandscapeoflungadenocarcinoma
AT zhangxinyi vasculogenicmimicryscoreidentifiestheprognosisandimmunelandscapeoflungadenocarcinoma
AT yexiaoqun vasculogenicmimicryscoreidentifiestheprognosisandimmunelandscapeoflungadenocarcinoma