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Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments

While the field of microbial biogeography has largely focused on the contributions of abiotic factors to community patterns, the potential influence of biotic interactions in structuring microbial communities, such as those mediated by the production of specialized metabolites, remains largely unkno...

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Autores principales: Chase, Alexander B., Bogdanov, Alexander, Demko, Alyssa M., Jensen, Paul R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10284892/
https://www.ncbi.nlm.nih.gov/pubmed/37061583
http://dx.doi.org/10.1038/s41396-023-01410-3
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author Chase, Alexander B.
Bogdanov, Alexander
Demko, Alyssa M.
Jensen, Paul R.
author_facet Chase, Alexander B.
Bogdanov, Alexander
Demko, Alyssa M.
Jensen, Paul R.
author_sort Chase, Alexander B.
collection PubMed
description While the field of microbial biogeography has largely focused on the contributions of abiotic factors to community patterns, the potential influence of biotic interactions in structuring microbial communities, such as those mediated by the production of specialized metabolites, remains largely unknown. Here, we examined the relationship between microbial community structure and specialized metabolism at local spatial scales in marine sediment samples collected from the Long-Term Ecological Research (LTER) site in Moorea, French Polynesia. By employing a multi-omic approach to characterize the taxonomic, functional, and specialized metabolite composition within sediment communities, we find that biogeographic patterns were driven by local scale processes (e.g., biotic interactions) and largely independent of dispersal limitation. Specifically, we observed high variation in biosynthetic potential (based on Bray-Curtis dissimilarity) between samples, even within 1 m(2) plots, that reflected uncharacterized chemical space associated with site-specific metabolomes. Ultimately, connecting biosynthetic potential to community metabolomes facilitated the in situ detection of natural products and revealed new insights into the complex metabolic dynamics associated with sediment microbial communities. Our study demonstrates the potential to integrate biosynthetic genes and metabolite production into assessments of microbial community dynamics.
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spelling pubmed-102848922023-06-23 Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments Chase, Alexander B. Bogdanov, Alexander Demko, Alyssa M. Jensen, Paul R. ISME J Article While the field of microbial biogeography has largely focused on the contributions of abiotic factors to community patterns, the potential influence of biotic interactions in structuring microbial communities, such as those mediated by the production of specialized metabolites, remains largely unknown. Here, we examined the relationship between microbial community structure and specialized metabolism at local spatial scales in marine sediment samples collected from the Long-Term Ecological Research (LTER) site in Moorea, French Polynesia. By employing a multi-omic approach to characterize the taxonomic, functional, and specialized metabolite composition within sediment communities, we find that biogeographic patterns were driven by local scale processes (e.g., biotic interactions) and largely independent of dispersal limitation. Specifically, we observed high variation in biosynthetic potential (based on Bray-Curtis dissimilarity) between samples, even within 1 m(2) plots, that reflected uncharacterized chemical space associated with site-specific metabolomes. Ultimately, connecting biosynthetic potential to community metabolomes facilitated the in situ detection of natural products and revealed new insights into the complex metabolic dynamics associated with sediment microbial communities. Our study demonstrates the potential to integrate biosynthetic genes and metabolite production into assessments of microbial community dynamics. Nature Publishing Group UK 2023-04-15 2023-07 /pmc/articles/PMC10284892/ /pubmed/37061583 http://dx.doi.org/10.1038/s41396-023-01410-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chase, Alexander B.
Bogdanov, Alexander
Demko, Alyssa M.
Jensen, Paul R.
Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments
title Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments
title_full Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments
title_fullStr Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments
title_full_unstemmed Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments
title_short Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments
title_sort biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10284892/
https://www.ncbi.nlm.nih.gov/pubmed/37061583
http://dx.doi.org/10.1038/s41396-023-01410-3
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