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iTAG an optimized IMiD-induced degron for targeted protein degradation in human and murine cells

To address the limitation associated with degron based systems, we have developed iTAG, a synthetic tag based on IMiDs/CELMoDs mechanism of action that improves and addresses the limitations of both PROTAC and previous IMiDs/CeLMoDs based tags. Using structural and sequence analysis, we systematical...

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Autores principales: Bouguenina, Habib, Nicolaou, Stephanos, Le Bihan, Yann-Vaï, Bowling, Elizabeth A., Calderon, Cheyenne, Caldwell, John J., Harrington, Brinley, Hayes, Angela, McAndrew, P. Craig, Mitsopoulos, Costas, Sialana, Fernando Jr., Scarpino, Andrea, Stubbs, Mark, Thapaliya, Arjun, Tyagi, Siddhartha, Wang, Hannah Z., Wood, Francesca, Burke, Rosemary, Raynaud, Florence, Choudhary, Jyoti, van Montfort, Rob L.M., Sadok, Amine, Westbrook, Thomas F., Collins, Ian, Chopra, Rajesh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10285648/
https://www.ncbi.nlm.nih.gov/pubmed/37360684
http://dx.doi.org/10.1016/j.isci.2023.107059
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author Bouguenina, Habib
Nicolaou, Stephanos
Le Bihan, Yann-Vaï
Bowling, Elizabeth A.
Calderon, Cheyenne
Caldwell, John J.
Harrington, Brinley
Hayes, Angela
McAndrew, P. Craig
Mitsopoulos, Costas
Sialana, Fernando Jr.
Scarpino, Andrea
Stubbs, Mark
Thapaliya, Arjun
Tyagi, Siddhartha
Wang, Hannah Z.
Wood, Francesca
Burke, Rosemary
Raynaud, Florence
Choudhary, Jyoti
van Montfort, Rob L.M.
Sadok, Amine
Westbrook, Thomas F.
Collins, Ian
Chopra, Rajesh
author_facet Bouguenina, Habib
Nicolaou, Stephanos
Le Bihan, Yann-Vaï
Bowling, Elizabeth A.
Calderon, Cheyenne
Caldwell, John J.
Harrington, Brinley
Hayes, Angela
McAndrew, P. Craig
Mitsopoulos, Costas
Sialana, Fernando Jr.
Scarpino, Andrea
Stubbs, Mark
Thapaliya, Arjun
Tyagi, Siddhartha
Wang, Hannah Z.
Wood, Francesca
Burke, Rosemary
Raynaud, Florence
Choudhary, Jyoti
van Montfort, Rob L.M.
Sadok, Amine
Westbrook, Thomas F.
Collins, Ian
Chopra, Rajesh
author_sort Bouguenina, Habib
collection PubMed
description To address the limitation associated with degron based systems, we have developed iTAG, a synthetic tag based on IMiDs/CELMoDs mechanism of action that improves and addresses the limitations of both PROTAC and previous IMiDs/CeLMoDs based tags. Using structural and sequence analysis, we systematically explored native and chimeric degron containing domains (DCDs) and evaluated their ability to induce degradation. We identified the optimal chimeric iTAG(DCD23 60aa) that elicits robust degradation of targets across cell types and subcellular localizations without exhibiting the well documented “hook effect” of PROTAC-based systems. We showed that iTAG can also induce target degradation by murine CRBN and enabled the exploration of natural neo-substrates that can be degraded by murine CRBN. Hence, the iTAG system constitutes a versatile tool to degrade targets across the human and murine proteome.
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spelling pubmed-102856482023-06-23 iTAG an optimized IMiD-induced degron for targeted protein degradation in human and murine cells Bouguenina, Habib Nicolaou, Stephanos Le Bihan, Yann-Vaï Bowling, Elizabeth A. Calderon, Cheyenne Caldwell, John J. Harrington, Brinley Hayes, Angela McAndrew, P. Craig Mitsopoulos, Costas Sialana, Fernando Jr. Scarpino, Andrea Stubbs, Mark Thapaliya, Arjun Tyagi, Siddhartha Wang, Hannah Z. Wood, Francesca Burke, Rosemary Raynaud, Florence Choudhary, Jyoti van Montfort, Rob L.M. Sadok, Amine Westbrook, Thomas F. Collins, Ian Chopra, Rajesh iScience Article To address the limitation associated with degron based systems, we have developed iTAG, a synthetic tag based on IMiDs/CELMoDs mechanism of action that improves and addresses the limitations of both PROTAC and previous IMiDs/CeLMoDs based tags. Using structural and sequence analysis, we systematically explored native and chimeric degron containing domains (DCDs) and evaluated their ability to induce degradation. We identified the optimal chimeric iTAG(DCD23 60aa) that elicits robust degradation of targets across cell types and subcellular localizations without exhibiting the well documented “hook effect” of PROTAC-based systems. We showed that iTAG can also induce target degradation by murine CRBN and enabled the exploration of natural neo-substrates that can be degraded by murine CRBN. Hence, the iTAG system constitutes a versatile tool to degrade targets across the human and murine proteome. Elsevier 2023-06-07 /pmc/articles/PMC10285648/ /pubmed/37360684 http://dx.doi.org/10.1016/j.isci.2023.107059 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Bouguenina, Habib
Nicolaou, Stephanos
Le Bihan, Yann-Vaï
Bowling, Elizabeth A.
Calderon, Cheyenne
Caldwell, John J.
Harrington, Brinley
Hayes, Angela
McAndrew, P. Craig
Mitsopoulos, Costas
Sialana, Fernando Jr.
Scarpino, Andrea
Stubbs, Mark
Thapaliya, Arjun
Tyagi, Siddhartha
Wang, Hannah Z.
Wood, Francesca
Burke, Rosemary
Raynaud, Florence
Choudhary, Jyoti
van Montfort, Rob L.M.
Sadok, Amine
Westbrook, Thomas F.
Collins, Ian
Chopra, Rajesh
iTAG an optimized IMiD-induced degron for targeted protein degradation in human and murine cells
title iTAG an optimized IMiD-induced degron for targeted protein degradation in human and murine cells
title_full iTAG an optimized IMiD-induced degron for targeted protein degradation in human and murine cells
title_fullStr iTAG an optimized IMiD-induced degron for targeted protein degradation in human and murine cells
title_full_unstemmed iTAG an optimized IMiD-induced degron for targeted protein degradation in human and murine cells
title_short iTAG an optimized IMiD-induced degron for targeted protein degradation in human and murine cells
title_sort itag an optimized imid-induced degron for targeted protein degradation in human and murine cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10285648/
https://www.ncbi.nlm.nih.gov/pubmed/37360684
http://dx.doi.org/10.1016/j.isci.2023.107059
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