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Energetics of the Glycosyl Transfer Reactions of Sucrose Phosphorylase
[Image: see text] From its structure and mechanism, sucrose phosphorylase is a specialized glycoside hydrolase that uses phosphate ions instead of water as the nucleophile of the reaction. Unlike the hydrolysis reaction, the phosphate reaction is readily reversible and, here, this has enabled the st...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10286314/ https://www.ncbi.nlm.nih.gov/pubmed/37253063 http://dx.doi.org/10.1021/acs.biochem.3c00080 |
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author | Vyas, Anisha Nidetzky, Bernd |
author_facet | Vyas, Anisha Nidetzky, Bernd |
author_sort | Vyas, Anisha |
collection | PubMed |
description | [Image: see text] From its structure and mechanism, sucrose phosphorylase is a specialized glycoside hydrolase that uses phosphate ions instead of water as the nucleophile of the reaction. Unlike the hydrolysis reaction, the phosphate reaction is readily reversible and, here, this has enabled the study of temperature effects on kinetic parameters to map the energetic profile of the complete catalytic process via a covalent glycosyl enzyme intermediate. Enzyme glycosylation from sucrose and α-glucose 1-phosphate (Glc1P) is rate-limiting in the forward (k(cat) = 84 s(–1)) and reverse direction (k(cat) = 22 s(–1)) of reaction at 30 °C. Enzyme–substrate association is driven by entropy (TΔS(b) ≥ +23 kJ/mol), likely arising from enzyme desolvation at the binding site for the leaving group. Approach from the ES complex to the transition state involves uptake of heat (ΔH(⧧) = 72 ± 5.2 kJ/mol) with little further change in entropy. The free energy barrier for the enzyme-catalyzed glycoside bond cleavage in the substrate is much lower than that for the non-enzymatic reaction (k(non)), ΔΔG(⧧) = ΔG(non)(⧧) – ΔG(enzyme)(⧧) = +72 kJ/mol; sucrose. This ΔΔG(⧧), which also describes the virtual binding affinity of the enzyme for the activated substrate in the transition state (∼10(14) M(–1)), is almost entirely enthalpic in origin. The enzymatic rate acceleration (k(cat)/k(non)) is ∼10(12)-fold and similar for reactions of sucrose and Glc1P. The 10(3)-fold lower reactivity (k(cat)/K(m)) of glycerol than fructose in enzyme deglycosylation reflects major losses in the activation entropy, suggesting a role of nucleophile/leaving group recognition by the enzyme in inducing the active-site preorganization required for optimum transition state stabilization by enthalpic forces. |
format | Online Article Text |
id | pubmed-10286314 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-102863142023-06-23 Energetics of the Glycosyl Transfer Reactions of Sucrose Phosphorylase Vyas, Anisha Nidetzky, Bernd Biochemistry [Image: see text] From its structure and mechanism, sucrose phosphorylase is a specialized glycoside hydrolase that uses phosphate ions instead of water as the nucleophile of the reaction. Unlike the hydrolysis reaction, the phosphate reaction is readily reversible and, here, this has enabled the study of temperature effects on kinetic parameters to map the energetic profile of the complete catalytic process via a covalent glycosyl enzyme intermediate. Enzyme glycosylation from sucrose and α-glucose 1-phosphate (Glc1P) is rate-limiting in the forward (k(cat) = 84 s(–1)) and reverse direction (k(cat) = 22 s(–1)) of reaction at 30 °C. Enzyme–substrate association is driven by entropy (TΔS(b) ≥ +23 kJ/mol), likely arising from enzyme desolvation at the binding site for the leaving group. Approach from the ES complex to the transition state involves uptake of heat (ΔH(⧧) = 72 ± 5.2 kJ/mol) with little further change in entropy. The free energy barrier for the enzyme-catalyzed glycoside bond cleavage in the substrate is much lower than that for the non-enzymatic reaction (k(non)), ΔΔG(⧧) = ΔG(non)(⧧) – ΔG(enzyme)(⧧) = +72 kJ/mol; sucrose. This ΔΔG(⧧), which also describes the virtual binding affinity of the enzyme for the activated substrate in the transition state (∼10(14) M(–1)), is almost entirely enthalpic in origin. The enzymatic rate acceleration (k(cat)/k(non)) is ∼10(12)-fold and similar for reactions of sucrose and Glc1P. The 10(3)-fold lower reactivity (k(cat)/K(m)) of glycerol than fructose in enzyme deglycosylation reflects major losses in the activation entropy, suggesting a role of nucleophile/leaving group recognition by the enzyme in inducing the active-site preorganization required for optimum transition state stabilization by enthalpic forces. American Chemical Society 2023-05-30 /pmc/articles/PMC10286314/ /pubmed/37253063 http://dx.doi.org/10.1021/acs.biochem.3c00080 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Vyas, Anisha Nidetzky, Bernd Energetics of the Glycosyl Transfer Reactions of Sucrose Phosphorylase |
title | Energetics of the Glycosyl Transfer Reactions of Sucrose
Phosphorylase |
title_full | Energetics of the Glycosyl Transfer Reactions of Sucrose
Phosphorylase |
title_fullStr | Energetics of the Glycosyl Transfer Reactions of Sucrose
Phosphorylase |
title_full_unstemmed | Energetics of the Glycosyl Transfer Reactions of Sucrose
Phosphorylase |
title_short | Energetics of the Glycosyl Transfer Reactions of Sucrose
Phosphorylase |
title_sort | energetics of the glycosyl transfer reactions of sucrose
phosphorylase |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10286314/ https://www.ncbi.nlm.nih.gov/pubmed/37253063 http://dx.doi.org/10.1021/acs.biochem.3c00080 |
work_keys_str_mv | AT vyasanisha energeticsoftheglycosyltransferreactionsofsucrosephosphorylase AT nidetzkybernd energeticsoftheglycosyltransferreactionsofsucrosephosphorylase |