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6D-QSAR for predicting biological activity of human aldose reductase inhibitors using quasar receptor surface modeling
The application of QSAR analysis dates back a half-century ago and is currently continuously employed in any rational drug design. The multi-dimensional QSAR modeling can be a promising tool for researchers to develop reliable predictive QSAR models for designing novel compounds. In the present work...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10286388/ https://www.ncbi.nlm.nih.gov/pubmed/37349775 http://dx.doi.org/10.1186/s13065-023-00970-x |
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author | Sokouti, Babak Hamzeh-Mivehroud, Maryam |
author_facet | Sokouti, Babak Hamzeh-Mivehroud, Maryam |
author_sort | Sokouti, Babak |
collection | PubMed |
description | The application of QSAR analysis dates back a half-century ago and is currently continuously employed in any rational drug design. The multi-dimensional QSAR modeling can be a promising tool for researchers to develop reliable predictive QSAR models for designing novel compounds. In the present work, we studied inhibitors of human aldose reductase (AR) to generate multi-dimensional QSAR models using 3D- and 6D-QSAR methods. For this purpose, Pentacle and Quasar’s programs were used to produce the QSAR models using corresponding dissociation constant (K(d)) values. By inspecting the performance metrics of the generated models, we achieved similar results with comparable internal validation statistics. However, considering the externally validated values, 6D-QSAR models provide significantly better prediction of endpoint values. The obtained results suggest that the higher the dimension of the QSAR model, the higher the performance of the generated model. However, more studies are required to verify these outcomes. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13065-023-00970-x. |
format | Online Article Text |
id | pubmed-10286388 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-102863882023-06-23 6D-QSAR for predicting biological activity of human aldose reductase inhibitors using quasar receptor surface modeling Sokouti, Babak Hamzeh-Mivehroud, Maryam BMC Chem Research The application of QSAR analysis dates back a half-century ago and is currently continuously employed in any rational drug design. The multi-dimensional QSAR modeling can be a promising tool for researchers to develop reliable predictive QSAR models for designing novel compounds. In the present work, we studied inhibitors of human aldose reductase (AR) to generate multi-dimensional QSAR models using 3D- and 6D-QSAR methods. For this purpose, Pentacle and Quasar’s programs were used to produce the QSAR models using corresponding dissociation constant (K(d)) values. By inspecting the performance metrics of the generated models, we achieved similar results with comparable internal validation statistics. However, considering the externally validated values, 6D-QSAR models provide significantly better prediction of endpoint values. The obtained results suggest that the higher the dimension of the QSAR model, the higher the performance of the generated model. However, more studies are required to verify these outcomes. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13065-023-00970-x. Springer International Publishing 2023-06-22 /pmc/articles/PMC10286388/ /pubmed/37349775 http://dx.doi.org/10.1186/s13065-023-00970-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Sokouti, Babak Hamzeh-Mivehroud, Maryam 6D-QSAR for predicting biological activity of human aldose reductase inhibitors using quasar receptor surface modeling |
title | 6D-QSAR for predicting biological activity of human aldose reductase inhibitors using quasar receptor surface modeling |
title_full | 6D-QSAR for predicting biological activity of human aldose reductase inhibitors using quasar receptor surface modeling |
title_fullStr | 6D-QSAR for predicting biological activity of human aldose reductase inhibitors using quasar receptor surface modeling |
title_full_unstemmed | 6D-QSAR for predicting biological activity of human aldose reductase inhibitors using quasar receptor surface modeling |
title_short | 6D-QSAR for predicting biological activity of human aldose reductase inhibitors using quasar receptor surface modeling |
title_sort | 6d-qsar for predicting biological activity of human aldose reductase inhibitors using quasar receptor surface modeling |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10286388/ https://www.ncbi.nlm.nih.gov/pubmed/37349775 http://dx.doi.org/10.1186/s13065-023-00970-x |
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